Co-expression analysis

Gene ID	1617806_at
Gene name	hypothetical protein LOC100249540
Homology with Arabidopsis	Similar to At2g39990: EIF2 (HF=4e-10)
Module size	6 genes
NF	0.43
%ile	64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.99	1617806_at	BQ797048	hypothetical protein LOC100249540	-	4e-10	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1622077_s_at	CF372353	hypothetical protein LOC100249199	-	3e-21	At3g27430	PBB1	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1613432_at	CF516959	hypothetical protein LOC100244217	-	1e-15	At1g67680	7S RNA binding	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.99	1614751_at	CA809521	hypothetical protein LOC100241010	-	5e-37	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.99	1608425_at	CB910322	hypothetical protein LOC100267018	-	1e-1	At5g67510	60S ribosomal protein L26 (RPL26B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	97.6	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.30743.1.S1_at, orthologous to the query gene, 1617806_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.30743.1.S1_at	At2g39990	-	-	7e-1	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.28549.2.S1_a_at	At2g39990	ribosomal protein L7	-	9e-34	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.28743.1.S1_at	At2g39990	-	-	5e-23	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.789.1.S1_a_at	At2g39990	elongation factor 1 beta'	-	7e-4	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.30628.2.S1_x_at	At2g39990	Ribosomal protein L36	-	3e-36	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.22849.1.S1_x_at	At2g39990	-	-	2e-68	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.1289.3.S1_at	At2g39990	-	-	8e-34	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.28291.2.S1_x_at	At2g39990	-	-	5e-42	At5g39740	60S ribosomal protein L5 (RPL5B)	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.5670.1.S1_at	At2g39990	-	-	1e-17	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.7180.1.S1_x_at	At2g39990	-	-	3e-28	At3g13580	60S ribosomal protein L7 (RPL7D)	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.27785.1.S1_a_at	At2g39990	-	-	4e-33	At5g59240	40S ribosomal protein S8 (RPS8B)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.22874.1.S1_x_at	At2g39990	-	-	1e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.14445.1.A1_x_at	At2g39990	-	-	2e+1	At5g63065	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.824.1.S1_a_at	At2g39990	Ribosomal protein L10A	-	8e-49	At5g22440	60S ribosomal protein L10A (RPL10aC)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.14419.1.S1_at	At2g39990	-	-	7e-71	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.28710.1.S1_x_at	At2g39990	-	-	3e-14	At1g74270	60S ribosomal protein L35a (RPL35aC)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.15265.1.S1_at	At2g39990	-	-	3e-124	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.24130.2.S1_x_at	At2g39990	60S ribosomal protein L15	-	6e-41	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.28291.4.S1_x_at	At2g39990	-	-	1e-54	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.28291.3.S1_x_at	At2g39990	-	-	1e-16	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.28338.1.S1_at	At2g39990	-	-	1e-19	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.27765.3.S1_at	At2g39990	Ribosomal protein L39	-	7e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.2739.4.S1_x_at	At2g39990	Ribosomal protein L19	-	3e-45	At3g16780	60S ribosomal protein L19 (RPL19B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.966.1.S1_s_at	At2g39990	-	-	7e-22	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.1289.3.S1_x_at	At2g39990	-	-	8e-34	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.805.1.S1_at	At2g39990	-	-	9e-15	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.14635.2.S1_a_at	At2g39990	Ribosomal Pr 117	-	1e-75	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.28308.1.S1_at	At2g39990	-	-	2e-15	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.1335.2.S1_x_at	At2g39990	-	-	2e-86	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.27765.2.S1_x_at	At2g39990	Ribosomal protein L39	-	6e-15	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.2605.2.S1_at	At2g39990	-	-	1e-16	At3g47370	40S ribosomal protein S20 (RPS20B)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.22683.2.S1_at	At2g39990	-	-	1e-32	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage