Co-expression analysis

Gene ID 1617806_at
Gene name hypothetical protein LOC100249540
Homology with ArabidopsisSimilar to At2g39990: EIF2 (HF=4e-10)
Module size 6 genes
NF 0.43
%ile 64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5980.60.991617806_atBQ797048hypothetical protein LOC100249540-4e-10At2g39990EIF2O.I.H.G.S.X.
0.5577.30.991621155_atBQ794745hypothetical protein LOC100248478-8e-34At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.H.G.S.X.
0.5375.20.981622077_s_atCF372353hypothetical protein LOC100249199-3e-21At3g27430PBB1O.I.H.G.S.X.
0.4464.10.981613432_atCF516959hypothetical protein LOC100244217-1e-15At1g676807S RNA bindingO.I.H.G.S.X.
0.2734.00.991614751_atCA809521hypothetical protein LOC100241010-5e-37At4g22380ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.1718.20.991608425_atCB910322hypothetical protein LOC100267018-1e-1At5g6751060S ribosomal protein L26 (RPL26B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.697.6GSM299460D_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.697.6GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.696.0GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.294.9GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.094.2GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436370Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM436361Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436362Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig5966_at, orthologous to the query gene, 1617806_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1Contig5966_atAt2g39990--9e-2At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.6784.7Contig5969_atAt2g39990--7e-4At1g64970G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)O.I.H.G.S.X.
0.6784.7Contig10453_atAt2g39990--9e-1At5g19485transferaseO.I.H.G.S.X.
0.5066.9Contig13318_atAt2g39990--1e-2At3g59010pectinesterase family proteinO.I.H.G.S.X.
0.4053.1EBpi01_SQ002_O15_atAt2g39990--2e+0At5g47130Bax inhibitor-1 family / BI-1 familyO.I.H.G.S.X.
0.3849.5Contig5809_atAt2g39990--2e-14At1g58440XF1O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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