Co-expression analysis

Gene ID 1617805_at
Gene name hypothetical protein LOC100254609
Homology with ArabidopsisSimilar to At1g12470: Pep3/Vps18/deep orange family protein (HF=1e-13)
Module size 8 genes
NF 0.55
%ile 81.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5779.80.971617805_atCD013683hypothetical protein LOC100254609-1e-13At1g12470Pep3/Vps18/deep orange family proteinO.I.H.G.S.X.
0.6787.90.981608070_atCF214791hypothetical protein LOC100245501-1e+0At4g10880unknown proteinO.I.H.G.S.X.
0.6183.20.981609143_atCF209852hypothetical protein LOC100254311-2e+1At5g66240transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.5779.80.981612852_atCB976927hypothetical protein LOC100243284-5e-76At5g62890permease, putativeO.I.H.G.S.X.
0.5072.70.981612516_atCB976044hypothetical protein LOC100252647-8e-9At4g39400BRI1 (BRASSINOSTEROID INSENSITIVE 1)O.I.H.G.S.X.
0.4666.50.981615115_atCD801173hypothetical protein LOC100244778-1e-38At5g05080UBC22 (ubiquitin-conjugating enzyme 22)O.I.H.G.S.X.
0.4361.50.981606807_atBQ794559hypothetical protein LOC100264697-7e-21At5g11710epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-relatedO.I.H.G.S.X.
0.4260.10.981609772_atCF511919hypothetical protein LOC100246247-3e-1At3g56880VQ motif-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.499.2GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.796.2GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.993.8GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.793.0GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.692.5GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM436411V. riparia (VR, PI588259) SD, 13h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.692.5GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.491.3GSM436363Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage