Co-expression analysis

Gene ID	1617805_at
Gene name	hypothetical protein LOC100254609
Homology with Arabidopsis	Similar to At1g12470: Pep3/Vps18/deep orange family protein (HF=1e-13)
Module size	8 genes
NF	0.55
%ile	81.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.97	1617805_at	CD013683	hypothetical protein LOC100254609	-	1e-13	At1g12470	Pep3/Vps18/deep orange family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1608070_at	CF214791	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1609143_at	CF209852	hypothetical protein LOC100254311	-	2e+1	At5g66240	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1612852_at	CB976927	hypothetical protein LOC100243284	-	5e-76	At5g62890	permease, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1612516_at	CB976044	hypothetical protein LOC100252647	-	8e-9	At4g39400	BRI1 (BRASSINOSTEROID INSENSITIVE 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1615115_at	CD801173	hypothetical protein LOC100244778	-	1e-38	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1606807_at	BQ794559	hypothetical protein LOC100264697	-	7e-21	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1609772_at	CF511919	hypothetical protein LOC100246247	-	3e-1	At3g56880	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.4	99.2	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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