Co-expression analysis

Gene ID	1617756_at
Gene name	hypothetical protein LOC100253194
Homology with Arabidopsis	Similar to At5g57560: TCH4 (Touch 4) (HF=2e+1)
Module size	6 genes
NF	0.92
%ile	99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.95	1618296_s_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.96	1615798_at	AB073013.1	-	-	1e-5	At1g66370	MYB113 (myb domain protein 113)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.97	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.96	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1610071_at	BQ797708	hypothetical protein LOC100253046	-	2e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
7.8	99.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, Zm.6879.1.A1_at, orthologous to the query gene, 1617756_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.6879.1.A1_at	At5g57560	-	-	4e+0	At3g24510	-	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.8277.1.S1_at	At5g57560	Granule bound starch synthase IIa precursor	-	2e-20	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.77	92.1	Zm.15815.1.A1_at	At5g57560	NADH:nitrate reductase	-	1e-21	At1g37130	NIA2 (NITRATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.18756.1.A1_at	At5g57560	hypothetical protein LOC100280138	-	1e+0	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.9907.1.A1_at	At5g57560	-	-	8e-2	At5g17840	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.2938.1.A1_at	At5g57560	hypothetical protein LOC100273709	-	2e+0	At4g38410	dehydrin, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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