Co-expression analysis

Gene ID	1617756_at
Gene name	hypothetical protein LOC100253194
Homology with Arabidopsis	Similar to At5g57560: TCH4 (Touch 4) (HF=2e+1)
Module size	6 genes
NF	0.92
%ile	99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.95	1618296_s_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.96	1615798_at	AB073013.1	-	-	1e-5	At1g66370	MYB113 (myb domain protein 113)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.97	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.96	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1610071_at	BQ797708	hypothetical protein LOC100253046	-	2e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
7.8	99.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.25054.1.A1_at, orthologous to the query gene, 1617756_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.6	PtpAffx.25054.1.A1_at	At5g57560	-	-	7e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.5733.1.S1_s_at	At5g57560	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	Ptp.5733.1.S1_at	At5g57560	-	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.8000.1.S1_at	At5g57560	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.3416.1.S1_s_at	At5g57560	-	-	0	Atmg01275	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.7976.1.S1_at	At5g57560	hypothetical protein	-	2e-3	At4g10840	kinesin light chain-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.207916.1.S1_s_at	At5g57560	s-adenosylmethionine synthetase 1	-	1e-179	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.249.85.A1_s_at	At5g57560	-	-	1e-85	At5g13490	AAC2 (ADP/ATP carrier 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.123845.1.S1_s_at	At5g57560	hypothetical protein	-	2e-21	At4g02500	XT2 (UDP-XYLOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.141227.1.A1_s_at	At5g57560	hypothetical protein	-	6e-19	At5g48520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	PtpAffx.1408.1.A1_s_at	At5g57560	hypothetical protein	-	6e-4	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.21710.1.S1_x_at	At5g57560	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.217775.1.S1_at	At5g57560	hypothetical protein	-	8e-6	At5g58160	actin binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.1497.2.S1_x_at	At5g57560	s-adenosylmethionine synthetase 5	-	3e-179	At1g02500	SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	PtpAffx.7088.1.S1_at	At5g57560	hypothetical protein	-	1e-49	At5g41950	binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.214211.1.S1_at	At5g57560	hypothetical protein	-	3e-37	At5g34850	PAP26 (PURPLE ACID PHOSPHATASE 26)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	Ptp.5393.1.S1_s_at	At5g57560	hypothetical protein	-	1e-84	At4g38510	vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.131235.1.S1_s_at	At5g57560	hypothetical protein	-	8e-6	At5g11710	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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