Co-expression analysis

Gene ID	1617756_at
Gene name	hypothetical protein LOC100253194
Homology with Arabidopsis	Similar to At5g57560: TCH4 (Touch 4) (HF=2e+1)
Module size	6 genes
NF	0.92
%ile	99.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1617756_at	CB981493	hypothetical protein LOC100253194	-	2e+1	At5g57560	TCH4 (Touch 4)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.95	1618296_s_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.96	1615798_at	AB073013.1	-	-	1e-5	At1g66370	MYB113 (myb domain protein 113)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.97	1611457_at	CD711959	-	-	1e+0	At2g01275	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.96	1620959_s_at	CB915151	myb-relared transcription factor VvMYBA2	-	4e+0	At5g19855	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1610071_at	BQ797708	hypothetical protein LOC100253046	-	2e-4	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
7.8	99.3	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.3	97.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.4	95.5	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, Gma.10529.2.S1_a_at, orthologous to the query gene, 1617756_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	Gma.10529.2.S1_a_at	At5g57560	-	-	1e-2	At3g59600	NRPB8B	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.1932.1.S1_s_at	At5g57560	-	-	1e-5	At3g05520	F-actin capping protein alpha subunit family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.17713.1.S1_at	At5g57560	-	-	1e-63	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.10576.1.S1_at	At5g57560	-	-	4e-4	At4g00585	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	GmaAffx.91977.1.S1_s_at	At5g57560	-	-	3e-63	At4g02580	NADH-ubiquinone oxidoreductase 24 kDa subunit, putative	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.58511.1.S1_at	At5g57560	-	-	5e-16	At2g18280	AtTLP2 (TUBBY LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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