Co-expression analysis

Gene ID	1617751_s_at
Gene name	hypothetical protein LOC100243312
Homology with Arabidopsis	Similar to At2g22980: serine-type carboxypeptidase (HF=8e-1)
Module size	18 genes
NF	0.43
%ile	63.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.88	1617751_s_at	CA813831	hypothetical protein LOC100243312	-	8e-1	At2g22980	serine-type carboxypeptidase	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1610428_at	CD012983	hypothetical protein LOC100263040	-	2e-4	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.95	1616147_at	CF404954	hypothetical protein LOC100243192	-	2e-6	At2g26800	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1606482_at	BQ796112	hypothetical protein LOC100243077	-	3e-10	At3g44830	lecithin:cholesterol acyltransferase family protein / LACT family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.92	1614047_s_at	CF512458	hypothetical protein LOC100268134	-	1e-1	At1g31300	-	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.95	1607967_at	CB009400	hypothetical protein LOC100261140	-	4e-1	At3g24860	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1618576_at	BQ800615	pectate lyase PL1-like	-	4e-124	At4g13710	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1615374_at	CB911656	hypothetical protein LOC100241955	-	8e-1	At1g34000	OHP2 (ONE-HELIX PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.94	1620050_at	CB009432	hypothetical protein LOC100244027	-	1e-5	At5g17500	glycosyl hydrolase family 5 protein / cellulase family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.92	1615257_at	CB972713	hexose transporter-like	-	6e-12	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1616116_at	CF604141	hypothetical protein LOC100268134	-	2e-21	At5g20250	DIN10 (DARK INDUCIBLE 10)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1612185_at	CB008768	hypothetical protein LOC100245556	-	3e-10	At5g66460	(1-4)-beta-mannan endohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.93	1619667_at	BQ797924	similar to DRT100	-	8e-1	At5g06860	PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.92	1608366_at	CB981300	hypothetical protein LOC100250312	-	1e+0	At5g12230	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1612296_at	CD802074	hypothetical protein LOC100241683	-	4e-12	At3g55920	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.94	1619968_at	CF604378	similar to cysteine protease Cp5	-	3e-2	At3g19400	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1614297_at	BQ796093	hypothetical protein LOC100264651	-	2e-6	At4g32000	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.92	1609496_at	CB914077	hypothetical protein LOC100258663	-	4e-4	At4g30410	transcription factor	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
1.9	87.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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