Co-expression analysis

Gene ID	1617697_at
Gene name
Homology with Arabidopsis	Similar to At4g27800: protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) (HF=1e-25)
Module size	22 genes
NF	0.27
%ile	38.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.91	1617697_at	CD714002	-	-	1e-25	At4g27800	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.94	1617517_at	CF606810	hypothetical protein LOC100265819	-	2e-2	At4g25990	CIL	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.96	1615369_at	CB918327	hypothetical protein LOC100244035	-	1e+0	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1617863_at	CA817296	hypothetical protein LOC100258796	-	4e-4	At5g20220	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1617391_at	CF211113	hypothetical protein LOC100254621	-	1e-55	At1g04620	coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.96	1611947_at	CA818604	hypothetical protein LOC100265593	-	2e-6	At5g50090	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1613501_at	BM438105	hypothetical protein LOC100256401	-	5e-19	At3g02690	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.93	1614156_at	CB339309	-	-	1e-3	At3g54050	fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.96	1608777_at	CB344861	hypothetical protein LOC100266496	-	6e-19	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1615234_at	CB342968	hypothetical protein LOC100258729	-	3e-17	At1g54350	ABC transporter family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1608295_at	CA817667	hypothetical protein LOC100258713	-	3e-7	At5g59610	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1607964_s_at	BM437259	hypothetical protein LOC100257686	-	4e-1	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1620522_at	CA809321	hypothetical protein LOC100257595	-	5e+0	At3g04280	ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1616345_at	CB920761	hypothetical protein LOC100241649	-	1e-9	At4g30810	scpl29 (serine carboxypeptidase-like 29)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1611423_s_at	CB916855	hypothetical protein LOC100254781	-	4e+0	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1610664_s_at	CF213279	hypothetical protein LOC100259928	-	5e+0	At5g18661	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.96	1616949_at	CF519047	hypothetical protein LOC100250114	-	2e-34	At5g53170	FTSH11 (FtsH protease 11)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.96	1618124_at	CB343324	-	-	2e-14	At3g19490	ATNHD1	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.94	1622857_at	CB001399	-	-	5e-2	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1617645_s_at	CA818763	hypothetical protein LOC100257292	-	2e-96	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.93	1608414_x_at	CF204375.1	-	-	2e+0	At1g48940	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.94	1618020_x_at	CB972570	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.9	87.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
1.8	86.0	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
1.7	84.7	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
1.6	83.3	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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