CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1617668_at

Gene name hypothetical protein LOC100243346
Homology with Arabidopsis Similar to At4g11080: high mobility group (HMG1/2) family protein (HF=5e-4)

Module size 6 genes

NF 0.69

%ile 93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein O.I. H.G. S.X.
0.71 89.5 0.97 1616463_at CF208407 hypothetical protein LOC100249922 - 4e-47 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) O.I. H.G. S.X.
0.67 87.9 0.97 1619323_at CF413821 hypothetical protein LOC100264304 - 7e+0 At5g37780 CAM1 (CALMODULIN 1) O.I. H.G. S.X.
0.61 83.2 0.97 1620623_at CF215757 hypothetical protein LOC100249108 - 4e-1 At5g25090 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.60 81.9 0.96 1614442_at CB970667 hypothetical protein LOC100253371 - 7e-6 At1g12830 unknown protein O.I. H.G. S.X.
0.31 41.3 0.97 1611168_at CF208285 hypothetical protein LOC100247366 - 2e-139 At1g50010 TUA2 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.2 99.4 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.8 97.8 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.7 97.7 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.0 96.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.7 96.2 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6 96.0 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
2.7 93.0 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the barley gene, Contig25984_at, orthologous to the query gene, 1617668_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 69.7 Contig25984_at At4g11080 - - 9e-1 At4g24380 unknown protein O.I. H.G. S.X.
0.80 92.5 Contig4333_at At4g11080 - - 6e-10 At1g64520 RPN12a (Regulatory Particle non-ATPase 12a) O.I. H.G. S.X.
0.43 56.4 Contig6570_at At4g11080 - - 1e-2 At1g75388 CPuORF5 (Conserved peptide upstream open reading frame 5) O.I. H.G. S.X.
0.40 53.1 Contig1954_at At4g11080 - - 2e+0 At1g31070 UDP-N-acetylglucosamine pyrophosphorylase-related O.I. H.G. S.X.
0.36 47.1 Contig24190_at At4g11080 - - 3e-1 At3g59110 protein kinase family protein O.I. H.G. S.X.
0.02 1.8 Contig7048_at At4g11080 - - 4e-15 At2g30050 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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