Co-expression analysis

Gene ID 1617668_at
Gene name hypothetical protein LOC100243346
Homology with ArabidopsisSimilar to At4g11080: high mobility group (HMG1/2) family protein (HF=5e-4)
Module size 6 genes
NF 0.69
%ile 93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.971617668_atCF514659hypothetical protein LOC100243346-5e-4At4g11080high mobility group (HMG1/2) family proteinO.I.H.G.S.X.
0.7189.50.971616463_atCF208407hypothetical protein LOC100249922-4e-47At3g20060UBC19 (ubiquitin-conjugating enzyme19)O.I.H.G.S.X.
0.6787.90.971619323_atCF413821hypothetical protein LOC100264304-7e+0At5g37780CAM1 (CALMODULIN 1)O.I.H.G.S.X.
0.6183.20.971620623_atCF215757hypothetical protein LOC100249108-4e-1At5g25090plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.6081.90.961614442_atCB970667hypothetical protein LOC100253371-7e-6At1g12830unknown proteinO.I.H.G.S.X.
0.3141.30.971611168_atCF208285hypothetical protein LOC100247366-2e-139At1g50010TUA2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.299.4GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.797.7GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.096.7GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.796.2GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.696.0GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299460D_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM147725Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation54Link to GEO
2.793.0GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.93128.1.S1_s_at, orthologous to the query gene, 1617668_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6GmaAffx.93128.1.S1_s_atAt4g11080--8e-11At4g23800high mobility group (HMG1/2) family proteinO.I.H.G.S.X.
0.7790.3GmaAffx.73672.1.S1_atAt4g11080--3e+0At5g60370unknown proteinO.I.H.G.S.X.
0.6382.9Gma.4759.1.A1_atAt4g11080--1e-1At2g16200protein binding / structural moleculeO.I.H.G.S.X.
0.5071.7Gma.10190.1.A1_atAt4g11080--4e+0At1g16840unknown proteinO.I.H.G.S.X.
0.4259.3GmaAffx.56217.1.A1_atAt4g11080--1e-12At1g03780targeting protein-relatedO.I.H.G.S.X.
0.3346.1Gma.775.2.S1_atAt4g11080--9e-39At3g54560HTA11O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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