CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1617668_at

Gene name hypothetical protein LOC100243346
Homology with Arabidopsis Similar to At4g11080: high mobility group (HMG1/2) family protein (HF=5e-4)

Module size 6 genes

NF 0.69

%ile 93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.97 1617668_at CF514659 hypothetical protein LOC100243346 - 5e-4 At4g11080 high mobility group (HMG1/2) family protein O.I. H.G. S.X.
0.71 89.5 0.97 1616463_at CF208407 hypothetical protein LOC100249922 - 4e-47 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) O.I. H.G. S.X.
0.67 87.9 0.97 1619323_at CF413821 hypothetical protein LOC100264304 - 7e+0 At5g37780 CAM1 (CALMODULIN 1) O.I. H.G. S.X.
0.61 83.2 0.97 1620623_at CF215757 hypothetical protein LOC100249108 - 4e-1 At5g25090 plastocyanin-like domain-containing protein O.I. H.G. S.X.
0.60 81.9 0.96 1614442_at CB970667 hypothetical protein LOC100253371 - 7e-6 At1g12830 unknown protein O.I. H.G. S.X.
0.31 41.3 0.97 1611168_at CF208285 hypothetical protein LOC100247366 - 2e-139 At1g50010 TUA2 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.2 99.4 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.8 97.8 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.7 97.7 GSM322368 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
4.0 96.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.7 96.2 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6 96.0 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM299462 D_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299460 D_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM147725 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation 54
2.7 93.0 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g11080, orthologous to the query gene, 1617668_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.12 4.9 At4g11080 826709 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV O.I. H.G. S.X.
0.31 33.8 At1g61450 842439 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.29 30.3 At5g16250 831485 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.27 26.2 At4g05520 825902 ATEHD2 (EPS15 HOMOLOGY DOMAIN 2) Encodes AtEHD2, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD1, At3g20290). O.I. H.G. S.X.
0.10 3.4 At4g33260 829462 CDC20.2 putative cdc20 protein (CDC20.2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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