Co-expression analysis

Gene ID	1617668_at
Gene name	hypothetical protein LOC100243346
Homology with Arabidopsis	Similar to At4g11080: high mobility group (HMG1/2) family protein (HF=5e-4)
Module size	6 genes
NF	0.69
%ile	93.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.97	1617668_at	CF514659	hypothetical protein LOC100243346	-	5e-4	At4g11080	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.97	1616463_at	CF208407	hypothetical protein LOC100249922	-	4e-47	At3g20060	UBC19 (ubiquitin-conjugating enzyme19)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1619323_at	CF413821	hypothetical protein LOC100264304	-	7e+0	At5g37780	CAM1 (CALMODULIN 1)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.97	1620623_at	CF215757	hypothetical protein LOC100249108	-	4e-1	At5g25090	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1614442_at	CB970667	hypothetical protein LOC100253371	-	7e-6	At1g12830	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1611168_at	CF208285	hypothetical protein LOC100247366	-	2e-139	At1g50010	TUA2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	99.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.7	97.7	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.0	96.7	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.6	96.0	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299460	D_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.7	93.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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