Co-expression analysis

Gene ID	1617655_at
Gene name	hypothetical protein LOC100262391
Homology with Arabidopsis	Similar to At3g16620: ATTOC120 (HF=5e-10)
Module size	6 genes
NF	0.61
%ile	87.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1617655_at	CB348593	hypothetical protein LOC100262391	-	5e-10	At3g16620	ATTOC120	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.99	1622765_at	CF405914	-	-	4e+0	At3g59450	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.99	1616867_at	CF405655	hypothetical protein LOC100254223	-	2e-17	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1620968_at	CF513304	hypothetical protein LOC100262977	-	5e+0	Atmg00640	-	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.99	1614667_at	CB976778	hypothetical protein LOC100243706	-	4e-6	At2g44200	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.99	1608653_at	CB975644	hypothetical protein LOC100263217	-	5e+0	At4g15020	DNA binding / protein dimerization	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM147693	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	22
3.5	95.7	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436391	V. riparia (VR, PI588259) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.1	89.1	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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