Co-expression analysis

Gene ID	1617646_at
Gene name	hypothetical protein LOC100261565
Homology with Arabidopsis	Similar to At5g16400: ATF2 (HF=4e-26)
Module size	6 genes
NF	0.59
%ile	85.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.98	1617646_at	CB340164	hypothetical protein LOC100261565	-	4e-26	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.99	1620744_at	CF403966	hypothetical protein LOC100248911	-	2e-6	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1611733_s_at	BQ797982	hypothetical protein LOC100240928	-	2e-12	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1618370_at	CF510718	hypothetical protein LOC100242802	-	8e-31	At4g12800	PSAL (photosystem I subunit L)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1619903_at	CD720479	hypothetical protein LOC100263275	-	8e-71	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1614598_at	CF373065	hypothetical protein LOC100266604	-	2e-4	At3g08940	LHCB4.2 (light harvesting complex PSII)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.0	94.2	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
2.5	91.9	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436412	V. riparia (VR, PI588259) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
1.9	87.2	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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