Co-expression analysis

Gene ID 1617609_at
Gene name hypothetical protein LOC100255514
Homology with ArabidopsisSimilar to At5g24380: YSL2 (YELLOW STRIPE LIKE 2) (HF=3e-24)
Module size 6 genes
NF 0.01
%ile 1.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.881617609_atCF207468hypothetical protein LOC100255514-3e-24At5g24380YSL2 (YELLOW STRIPE LIKE 2)O.I.H.G.S.X.
0.023.20.911617829_atCF215141hypothetical protein LOC100244817-9e-2At5g60800heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.012.10.931614153_atCF207979hypothetical protein LOC100267681-6e-43At5g13110G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2)O.I.H.G.S.X.
0.012.10.921621047_atCB968782--1e+0At1g71050heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X.
0.012.10.901617180_s_atCA814162hypothetical protein LOC100247137-2e-33At3g56240CCH (COPPER CHAPERONE)O.I.H.G.S.X.
-0.50.911615231_atCF607773hypothetical protein LOC100254995-1e-19At2g31680AtRABA5d (Arabidopsis Rab GTPase homolog A5d)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.696.0GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
3.595.7GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.495.5GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
3.294.9GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
3.094.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.491.3GSM436350Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.16423.1.S1_at, orthologous to the query gene, 1617609_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4875.4PtpAffx.16423.1.S1_atAt5g24380oligopeptide transporter OPT family-3e-10At5g53550YSL3 (YELLOW STRIPE LIKE 3)O.I.H.G.S.X.
0.9199.2PtpAffx.1601.1.S1_x_atAt5g24380hypothetical protein-4e-19At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.9097.9PtpAffx.1601.1.S1_atAt5g24380hypothetical protein-4e-19At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.8497.1PtpAffx.4943.1.A1_a_atAt5g24380--9e-2At2g03420unknown proteinO.I.H.G.S.X.
0.7091.7PtpAffx.47448.1.S1_a_atAt5g24380hypothetical protein-4e-2At5g45660unknown proteinO.I.H.G.S.X.
0.6791.1PtpAffx.30743.1.A1_a_atAt5g24380hypothetical protein-4e-1At3g22110PAC1O.I.H.G.S.X.
0.6791.1PtpAffx.101654.1.A1_atAt5g24380hypothetical protein-1e-1At1g10155ATPP2-A10 (PHLOEM PROTEIN 2-A10)O.I.H.G.S.X.
0.5784.2PtpAffx.220806.1.S1_atAt5g24380hypothetical protein-8e-2At3g50120unknown proteinO.I.H.G.S.X.
0.5784.2PtpAffx.249.102.A1_x_atAt5g24380--2e-2At1g76930ATEXT4 (EXTENSIN 4)O.I.H.G.S.X.
0.5380.5PtpAffx.64618.1.S1_atAt5g24380hypothetical protein-1e-8At4g16190cysteine proteinase, putativeO.I.H.G.S.X.
0.3255.2PtpAffx.23759.1.S1_atAt5g24380--1e-9At2g22660-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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