Co-expression analysis

Gene ID 1617609_at
Gene name hypothetical protein LOC100255514
Homology with ArabidopsisSimilar to At5g24380: YSL2 (YELLOW STRIPE LIKE 2) (HF=3e-24)
Module size 6 genes
NF 0.01
%ile 1.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.881617609_atCF207468hypothetical protein LOC100255514-3e-24At5g24380YSL2 (YELLOW STRIPE LIKE 2)O.I.H.G.S.X. protein LOC100244817-9e-2At5g60800heavy-metal-associated domain-containing proteinO.I.H.G.S.X. protein LOC100267681-6e-43At5g13110G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2)O.I.H.G.S.X. domain-containing protein / copper chaperone (CCH)-relatedO.I.H.G.S.X. protein LOC100247137-2e-33At3g56240CCH (COPPER CHAPERONE)O.I.H.G.S.X.
-0.50.911615231_atCF607773hypothetical protein LOC100254995-1e-19At2g31680AtRABA5d (Arabidopsis Rab GTPase homolog A5d)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.696.0GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.696.0GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
3.595.7GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.495.5GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
3.294.9GSM147720Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation49Link to GEO
3.094.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.491.3GSM436350Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.15578.1.S1_at, orthologous to the query gene, 1617609_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.2Gma.15578.1.S1_atAt5g24380--2e-15At5g53550YSL3 (YELLOW STRIPE LIKE 3)O.I.H.G.S.X.
0.3447.2Gma.6914.1.A1_atAt5g24380--4e+0At5g64590unknown proteinO.I.H.G.S.X.
0.3346.1Gma.7199.1.S1_atAt5g24380--7e-56At4g29490aminopeptidase/ manganese ion bindingO.I.H.G.S.X.
0.3040.4Gma.15598.1.S1_atAt5g24380--4e+0At5g65400unknown proteinO.I.H.G.S.X.
0.2633.9Gma.6744.1.S1_atAt5g24380--2e-53At4g38040exostosin family proteinO.I.H.G.S.X.
0.2430.9Gma.932.1.S1_atAt5g24380--3e-7At3g01910SOX (SULFITE OXIDASE)O.I.H.G.S.X.
0.2430.9Gma.4754.1.S1_atAt5g24380--1e-20At5g19150carbohydrate kinase familyO.I.H.G.S.X.
0.1721.2GmaAffx.89071.1.S1_s_atAt5g24380--2e-36At1g26550peptidyl-prolyl cis-trans isomerase PPIC-type family proteinO.I.H.G.S.X.
0.1518.7GmaAffx.51675.1.A1_atAt5g24380--8e-5At2g39805integral membrane Yip1 family proteinO.I.H.G.S.X.
0.1316.3Gma.10711.1.S1_a_atAt5g24380--2e+0At5g27440unknown proteinO.I.H.G.S.X.
0.1316.3Gma.4905.1.S1_a_atAt5g24380--1e-79At3g20800rcd1-like cell differentiation protein, putativeO.I.H.G.S.X.
0.1013.0Gma.14419.1.S1_atAt5g24380--4e-4At3g06040ribosomal protein L12 family proteinO.I.H.G.S.X.
0.0912.0Gma.4388.1.S1_a_atAt5g24380--2e-104At1g63770peptidase M1 family proteinO.I.H.G.S.X.

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