CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1617609_at

Gene name hypothetical protein LOC100255514
Homology with Arabidopsis Similar to At5g24380: YSL2 (YELLOW STRIPE LIKE 2) (HF=3e-24)

Module size 6 genes

NF 0.01

%ile 1.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.88 1617609_at CF207468 hypothetical protein LOC100255514 - 3e-24 At5g24380 YSL2 (YELLOW STRIPE LIKE 2) O.I. H.G. S.X.
0.02 3.2 0.91 1617829_at CF215141 hypothetical protein LOC100244817 - 9e-2 At5g60800 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.01 2.1 0.93 1614153_at CF207979 hypothetical protein LOC100267681 - 6e-43 At5g13110 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) O.I. H.G. S.X.
0.01 2.1 0.92 1621047_at CB968782 - - 1e+0 At1g71050 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related O.I. H.G. S.X.
0.01 2.1 0.90 1617180_s_at CA814162 hypothetical protein LOC100247137 - 2e-33 At3g56240 CCH (COPPER CHAPERONE) O.I. H.G. S.X.
- 0.5 0.91 1615231_at CF607773 hypothetical protein LOC100254995 - 1e-19 At2g31680 AtRABA5d (Arabidopsis Rab GTPase homolog A5d) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.6 96.0 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.6 96.0 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
3.5 95.7 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
3.4 95.5 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
3.2 94.9 GSM147720 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 49
3.0 94.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.4 91.3 GSM436350 Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the soybean gene, Gma.15578.1.S1_at, orthologous to the query gene, 1617609_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.2 Gma.15578.1.S1_at At5g24380 - - 2e-15 At5g53550 YSL3 (YELLOW STRIPE LIKE 3) O.I. H.G. S.X.
0.34 47.2 Gma.6914.1.A1_at At5g24380 - - 4e+0 At5g64590 unknown protein O.I. H.G. S.X.
0.33 46.1 Gma.7199.1.S1_at At5g24380 - - 7e-56 At4g29490 aminopeptidase/ manganese ion binding O.I. H.G. S.X.
0.30 40.4 Gma.15598.1.S1_at At5g24380 - - 4e+0 At5g65400 unknown protein O.I. H.G. S.X.
0.26 33.9 Gma.6744.1.S1_at At5g24380 - - 2e-53 At4g38040 exostosin family protein O.I. H.G. S.X.
0.24 30.9 Gma.932.1.S1_at At5g24380 - - 3e-7 At3g01910 SOX (SULFITE OXIDASE) O.I. H.G. S.X.
0.24 30.9 Gma.4754.1.S1_at At5g24380 - - 1e-20 At5g19150 carbohydrate kinase family O.I. H.G. S.X.
0.21 26.6 GmaAffx.41769.1.S1_at At5g24380 - - 1e-17 At1g19140 - O.I. H.G. S.X.
0.17 21.2 GmaAffx.89071.1.S1_s_at At5g24380 - - 2e-36 At1g26550 peptidyl-prolyl cis-trans isomerase PPIC-type family protein O.I. H.G. S.X.
0.15 18.7 GmaAffx.51675.1.A1_at At5g24380 - - 8e-5 At2g39805 integral membrane Yip1 family protein O.I. H.G. S.X.
0.14 17.5 Gma.6113.1.S1_at At5g24380 - - 3e-30 At4g02080 ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2) O.I. H.G. S.X.
0.14 17.5 Gma.16339.1.S1_at At5g24380 - - 2e+0 At4g01245 - O.I. H.G. S.X.
0.13 16.3 Gma.10711.1.S1_a_at At5g24380 - - 2e+0 At5g27440 unknown protein O.I. H.G. S.X.
0.13 16.3 Gma.4905.1.S1_a_at At5g24380 - - 1e-79 At3g20800 rcd1-like cell differentiation protein, putative O.I. H.G. S.X.
0.10 13.0 Gma.14419.1.S1_at At5g24380 - - 4e-4 At3g06040 ribosomal protein L12 family protein O.I. H.G. S.X.
0.09 12.0 Gma.4388.1.S1_a_at At5g24380 - - 2e-104 At1g63770 peptidase M1 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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