CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1617607_at

Gene name
Homology with Arabidopsis Similar to At4g17090: CT-BMY (CHLOROPLAST BETA-AMYLASE) (HF=3e-2)

Module size 6 genes

NF 0.37

%ile 54.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 77.3 0.96 1617607_at CB918932 - - 3e-2 At4g17090 CT-BMY (CHLOROPLAST BETA-AMYLASE) O.I. H.G. S.X.
0.44 64.1 0.95 1617721_at CF568847 - - 1e-76 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) O.I. H.G. S.X.
0.38 53.6 0.96 1613291_at CF972323.1 - - 4e-4 At3g13410 unknown protein O.I. H.G. S.X.
0.33 45.7 0.95 1606450_at CD712784 - - 2e-12 At3g20560 ATPDIL5-3 (PDI-LIKE 5-3) O.I. H.G. S.X.
0.29 37.7 0.95 1619724_at CA818237 - - 1e-23 At5g27640 TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) O.I. H.G. S.X.
0.18 19.4 0.96 1621365_at CK136934.1 - - 9e-69 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.1 94.6 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.6 92.5 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
2.5 91.9 GSM147741 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 70
2.5 91.9 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
2.2 89.9 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
2.2 89.9 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
2.1 89.1 GSM147675 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 4
2.1 89.1 GSM147703 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 32
2.0 88.2 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
2.0 88.2 GSM147712 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation 41

Inter-species module comparison

A co-expression module including the rice gene, Os01g0236800, orthologous to the query gene, 1617607_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 Os01g0236800 At4g17090 - Glycoside hydrolase, family 14 protein 3e+0 At1g08120 - O.I. H.G. S.X.
0.50 68.0 Os06g0604500 At4g17090 - Calcium-binding EF-hand domain containing protein 5e-32 At5g07320 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.35 41.7 Os01g0641700 At4g17090 - Conserved hypothetical protein 1e-5 At3g02420 unknown protein O.I. H.G. S.X.
0.29 31.1 Os03g0227300 At4g17090 - 5'-3' exonuclease domain containing protein 6e-6 At3g52050 5'-3' exonuclease family protein O.I. H.G. S.X.
0.23 21.2 Os03g0247100 At4g17090 - Conserved hypothetical protein 2e-8 At3g60850 unknown protein O.I. H.G. S.X.
0.19 15.1 Os01g0101600 At4g17090 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-6 At3g23900 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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