Co-expression analysis

Gene ID	1617607_at
Gene name
Homology with Arabidopsis	Similar to At4g17090: CT-BMY (CHLOROPLAST BETA-AMYLASE) (HF=3e-2)
Module size	6 genes
NF	0.37
%ile	54.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.96	1617607_at	CB918932	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1613291_at	CF972323.1	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1606450_at	CD712784	-	-	2e-12	At3g20560	ATPDIL5-3 (PDI-LIKE 5-3)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1619724_at	CA818237	-	-	1e-23	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.6	92.5	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.5	91.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.2	89.9	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
2.2	89.9	GSM147692	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	21
2.1	89.1	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
2.1	89.1	GSM147703	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	32
2.0	88.2	GSM147686	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	15
2.0	88.2	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41

Inter-species module comparison

A co-expression module including the barley gene, Contig10917_at, orthologous to the query gene, 1617607_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig10917_at	At4g17090	-	-	5e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.83	94.0	HV_CEb0017F03r2_s_at	At4g17090	light-harvesting complex I	-	2e-11	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig2999_at	At4g17090	-	-	6e-7	At5g09220	AAP2 (AMINO ACID PERMEASE 2)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig7964_at	At4g17090	-	-	4e-2	At1g19140	-	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig16787_at	At4g17090	-	-	2e+0	At3g11320	organic anion transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig12656_s_at	At4g17090	-	-	8e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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