Co-expression analysis

Gene ID	1617600_at
Gene name	hypothetical protein LOC100267978
Homology with Arabidopsis	Similar to At3g26490: phototropic-responsive NPH3 family protein (HF=2e-5)
Module size	7 genes
NF	0.49
%ile	73.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	95.1	0.92	1617600_at	CF513622	hypothetical protein LOC100267978	-	2e-5	At3g26490	phototropic-responsive NPH3 family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1620634_at	CD720882	hypothetical protein LOC100247245	-	7e-18	At1g44446	CH1 (CHLORINA 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1610735_at	CB341620	hypothetical protein LOC100258753	-	2e-3	At1g18660	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1620639_at	CA817351	hypothetical protein LOC100247658	-	3e-1	At1g10455	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1618249_at	CF510539	hypothetical protein LOC100260378	-	2e-39	At2g24270	ALDH11A3	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1622682_at	CB001944	hypothetical protein LOC100256501	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.95	1618107_at	CF403374	hypothetical protein LOC100263831	-	1e-7	At4g25650	ACD1-LIKE (ACD1-LIKE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.6	97.6	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.9	87.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.9	87.2	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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