Co-expression analysis

Gene ID	1617505_at
Gene name
Homology with Arabidopsis	Similar to At4g10080: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.29
%ile	40.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.93	1617505_at	CF514355	-	-	1e+0	At4g10080	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.95	1609147_at	CB979150	hypothetical protein LOC100256452	-	3e-15	At1g04410	malate dehydrogenase, cytosolic, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1621379_at	CF214294	hypothetical protein LOC100267719	-	2e-4	At1g26750	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.94	1619227_at	CA817026	similar to cation chloride cotransporter	-	7e-8	At1g30450	CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1620488_at	BQ798449	hypothetical protein LOC100264952	-	6e+0	At1g48070	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.95	1621310_at	BQ792458	hypothetical protein LOC100244933	-	1e+0	At1g51300	acyl-protein thioesterase-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
2.7	93.0	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
2.3	90.7	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.3	90.7	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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