Co-expression analysis

Gene ID	1617478_at
Gene name
Homology with Arabidopsis	Similar to At4g09467: - (HF=3e+0)
Module size	29 genes
NF	0.25
%ile	34.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	0.93	1617478_at	BQ792138	-	-	3e+0	At4g09467	-	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.95	1607247_at	CF201636.1	-	-	1e-3	At3g03270	universal stress protein (USP) family protein / early nodulin ENOD18 family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.96	1608672_s_at	CK138170.1	-	-	6e-33	At2g21580	40S ribosomal protein S25 (RPS25B)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1622255_at	BQ797861	-	-	2e-2	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1607207_at	CF513432	hypothetical LOC100263771	-	7e-5	At3g28690	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1608082_s_at	CF403706	-	-	8e-1	At2g42280	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1619122_s_at	CF515522	hypothetical protein LOC100244610	-	3e-26	At5g38470	DNA repair protein RAD23, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1611593_at	BQ799465	-	-	5e+0	At5g63440	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1617217_at	CB342098	hypothetical protein LOC100241455	-	2e-31	At2g46260	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1622571_at	CB970577	hypothetical protein LOC100255631	-	3e-11	At2g21230	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1613219_at	CF568857	-	-	4e-74	At5g28850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1611502_at	CB913863	-	-	7e-14	At3g14180	transcription factor	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.96	1608760_at	CB910345	-	-	5e-8	At5g17640	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1610674_at	CF511328	hypothetical protein LOC100242639	-	2e-158	At3g23340	ckl10 (Casein Kinase I-like 10)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1614905_at	BQ794294	hypothetical protein LOC100266945	-	7e-96	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1609948_at	BQ793462	hypothetical protein LOC100259405	-	3e-1	At3g21710	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1616753_at	CB343298	hypothetical protein LOC100262441	-	3e-27	At2g46920	POL (poltergeist)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1609942_at	CF210968	hypothetical protein LOC100262467	-	5e+0	At5g67580	TRB2	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1608155_at	CF210980	hypothetical protein LOC100252195	-	1e-31	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1615411_s_at	BQ799375	hypothetical protein LOC100266324	-	3e-4	At1g43130	LCV2 (LIKE COV 2)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1613621_s_at	CD721086	hypothetical protein LOC100246359	-	3e-1	At5g58412	-	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1611616_at	CF406000	hypothetical protein LOC100250213	-	8e-12	At2g30530	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1606693_at	CF510824	hypothetical protein LOC100265371	-	3e-43	At5g05670	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1609578_at	CF372299	hypothetical protein LOC100247401	-	5e-27	At2g17530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.98	1611961_at	CF516769	hypothetical protein LOC100242919	-	2e-9	At5g51620	-	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1615016_at	BQ794197	hypothetical protein LOC100241603	-	7e-2	At3g14480	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1620908_at	CD013688	hypothetical protein LOC100247344	-	3e-102	At4g28880	ckl3 (Casein Kinase I-like 3)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1611082_s_at	CD711393	hypothetical protein LOC100262228	-	3e-42	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.98	1609713_at	CF515520	similar to ribosomal protein L10a	-	4e-51	At2g27530	PGY1 (PIGGYBACK1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.7	84.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.7	84.7	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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