Co-expression analysis

Gene ID	1617444_s_at
Gene name	hypothetical protein LOC100243312
Homology with Arabidopsis	Similar to At3g45140: LOX2 (LIPOXYGENASE 2) (HF=3e-4)
Module size	6 genes
NF	0.18
%ile	26.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	0.94	1617444_s_at	CF373801	hypothetical protein LOC100243312	-	3e-4	At3g45140	LOX2 (LIPOXYGENASE 2)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.93	1608892_at	CF373801	hypothetical protein LOC100243312	-	3e-4	At3g45140	LOX2 (LIPOXYGENASE 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1622019_s_at	CF204368.1	hypothetical protein LOC100243312	-	2e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.95	1606521_at	CF371891	hypothetical protein LOC100256590	-	5e-1	At4g37140	MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.95	1622645_at	CF208259	hypothetical protein LOC100245405	-	1e-83	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.95	1612176_at	CF212948	hypothetical protein LOC100250907	-	5e-23	At3g17940	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.4	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.0	94.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.8	93.4	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.5	91.9	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.4	91.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
2.2	89.9	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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