Co-expression analysis

Gene ID 1617434_at
Gene name
Homology with ArabidopsisSimilar to At1g33880: avirulence-responsive family protein / avirulence induced gene (AIG1) family protein (HF=1e-1)
Module size 8 genes
NF 0.04
%ile 8.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.20.921617434_atBM437203--1e-1At1g33880avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinO.I.H.G.S.X.
0.1819.40.931616128_s_atCF203713.1hypothetical protein LOC100251245-6e+0At5g10450GRF6 (G-box regulating factor 6)O.I.H.G.S.X.
0.1616.70.921621984_atCF569216.1--6e+0At3g16432unknown proteinO.I.H.G.S.X.
0.034.20.941621803_atCB007579--3e+0At5g46300unknown proteinO.I.H.G.S.X.
0.034.20.941621412_atCD800872hypothetical protein LOC100265840-4e+0At3g02240unknown proteinO.I.H.G.S.X.
0.023.20.931620444_atCD715631--1e-29At5g57190PSD2 (phosphatidylserine decarboxylase 2)O.I.H.G.S.X.
0.023.20.951618628_atCD800397hypothetical protein LOC100244382 /// similar to Os03g0235100-3e-17At1g61150-O.I.H.G.S.X.
0.012.10.941611948_atCF215154hypothetical protein LOC100249742-5e-103At1g52280AtRABG3d (Arabidopsis Rab GTPase homolog G3d)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.098.0GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.297.1GSM287890Pink soft berry C25 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.996.6GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.696.0GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM287871Green hard berry C4 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.395.2GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.591.9GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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