Co-expression analysis

Gene ID	1617399_at
Gene name	hypothetical protein LOC100262132
Homology with Arabidopsis	Similar to At5g17790: VAR3 (VARIEGATED 3) (HF=5e-21)
Module size	26 genes
NF	0.48
%ile	72.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.95	1617399_at	CB342525	hypothetical protein LOC100262132	-	5e-21	At5g17790	VAR3 (VARIEGATED 3)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1618798_s_at	CF213901	hypothetical protein LOC100243733	-	2e-20	At3g10670	ATNAP7	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.97	1607811_at	CF212657	hypothetical protein LOC100251024	-	1e-75	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.68	88.0	0.96	1622619_at	BQ799372	hypothetical protein LOC100252967	-	4e-7	At3g60210	chloroplast chaperonin 10, putative	O.I.	H.G.	S.X.	Please select
0.62	83.3	0.96	1606882_at	CF511462	hypothetical protein LOC100259086	-	5e-4	At1g45170	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.96	1616948_at	CB972594	similar to putative tryptophanyl-tRNA synthetase	-	6e-12	At2g25840	OVA4 (ovule abortion 4)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1618995_at	CF373614	hypothetical protein LOC100261804	-	2e-6	At4g25370	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	0.97	1609111_at	CF207933	hypothetical protein LOC100263832	-	2e-93	At3g13470	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1612007_at	BM437534	hypothetical protein LOC100246556	-	1e-10	At1g23360	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.97	1615706_at	CA816068	hypothetical protein LOC100257450	-	1e-4	At1g44920	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.96	1620835_at	BQ800355	-	-	6e-1	At3g45443	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.96	1607057_at	CD009181	hypothetical protein LOC100261689	-	2e-24	At3g21300	RNA methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1609993_at	CF415478	hypothetical protein LOC100267329	-	1e-3	At3g55040	GSTL2	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1609160_at	CF215744	hypothetical protein LOC100257877	-	2e-28	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1612634_at	CF208087	hypothetical protein LOC100253324	-	1e-27	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1613691_s_at	CF511746	hypothetical protein LOC100254533	-	5e-35	At2g05100	LHCB2.1	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.96	1609394_at	CB341261	hypothetical protein LOC100257777	-	2e-39	At4g36910	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1616065_at	CA816079	hypothetical protein LOC100245646	-	1e-14	At3g59980	tRNA-binding region domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.96	1618087_at	BQ797216	similar to RelA-SpoT like protein RSH1	-	5e+0	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1613278_at	CF212139	hypothetical protein LOC100255222	-	4e+0	At2g20760	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	1617630_at	CF514753	hypothetical protein LOC100251032	-	3e-10	At3g52750	FTSZ2-2	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1611665_at	CD802305	hypothetical protein LOC100264361	-	5e-26	At1g04940	TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1610544_s_at	CB002886	hypothetical protein LOC100246662	-	1e-25	At4g01150	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1607285_s_at	CD013720	hypothetical protein LOC100262997	-	3e-54	At5g52520	OVA6 (OVULE ABORTION 6)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1620011_at	CA809496	O-acetylserine(thiol)-lyase	-	9e-27	At3g59760	OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.5	91.9	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.4	91.3	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.4	91.3	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.2	89.9	GSM147718	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	47
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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