CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1617386_at

Gene name hypothetical protein LOC100265283
Homology with Arabidopsis Similar to At3g02580: STE1 (STEROL 1) (HF=2e-27)

Module size 13 genes

NF 0.51

%ile 76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.5 0.94 1617386_at CF372270 hypothetical protein LOC100265283 - 2e-27 At3g02580 STE1 (STEROL 1) O.I. H.G. S.X.
0.67 87.9 0.96 1612074_at CB339898 similar to kinesin like protein - 6e-21 At5g51720 unknown protein O.I. H.G. S.X.
0.67 87.9 0.97 1609736_at CA812857 hypothetical protein LOC100248605 - 6e-6 At2g34460 flavin reductase-related O.I. H.G. S.X.
0.64 84.7 0.96 1621016_at CA817314 similar to transporter-related - 3e-10 At5g20380 PHT4 O.I. H.G. S.X.
0.56 79.4 0.97 1612484_at CF510569 hypothetical protein LOC100254359 /// hypothetical protein LOC100267643 - 7e-8 At5g10470 kinesin motor protein-related O.I. H.G. S.X.
0.50 72.7 0.97 1622679_at CD798070 hypothetical protein LOC100257992 - 1e-20 At5g06220 - O.I. H.G. S.X.
0.48 68.8 0.97 1621073_at CB914439 GDP-mannose-3',5'-epimerase - 0 At5g28840 GME (GDP-D-MANNOSE 3',5'-EPIMERASE) O.I. H.G. S.X.
0.46 66.5 0.95 1609508_at CB976923 hypothetical protein LOC100242787 - 4e-3 At5g45960 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.46 66.5 0.97 1607482_at CB342115 - - 7e-16 At5g02790 In2-1 protein, putative O.I. H.G. S.X.
0.43 61.5 0.97 1616613_at CD009052 hypothetical protein LOC100259706 - 6e-1 At4g02920 unknown protein O.I. H.G. S.X.
0.33 45.7 0.97 1608777_at CB344861 hypothetical protein LOC100266496 - 6e-19 At3g63410 APG1 (ALBINO OR PALE GREEN MUTANT 1) O.I. H.G. S.X.
0.30 39.4 0.96 1612442_at BQ798338 - - 4e+0 Atmg00890 - O.I. H.G. S.X.
0.27 34.0 0.97 1615234_at CB342968 hypothetical protein LOC100258729 - 3e-17 At1g54350 ABC transporter family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 96.6 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM287869 Green hard berry C3 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.1 94.6 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM287883 Green soft berry A23 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.8 86.0 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
1.7 84.7 GSM436388 V. riparia (VR, PI588259) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
1.7 84.7 GSM287886 Green soft berry C22 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.7 84.7 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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