Co-expression analysis

Gene ID	1617361_at
Gene name	hypothetical protein LOC100244017
Homology with Arabidopsis	Similar to At4g35630: PSAT (HF=3e-50)
Module size	7 genes
NF	0.66
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.94	1617361_at	CF404356	hypothetical protein LOC100244017	-	3e-50	At4g35630	PSAT	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.95	1620725_at	BQ795649	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.95	1618716_at	CB917669	similar to Os06g0665100	-	1e-22	At5g44730	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1609762_s_at	CD712929	hypothetical protein LOC100257013	-	4e-19	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.94	1607804_at	CB004035	-	-	2e-45	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.94	1611013_at	CF518927	hypothetical protein LOC100243798	-	4e-1	At5g22890	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1611428_at	CD797261	hypothetical protein LOC100242068	-	1e+0	At5g48470	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.6	83.3	GSM287903	Red soft berry A7 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage