Co-expression analysis

Gene ID	1617353_at
Gene name	hypothetical protein LOC100244602
Homology with Arabidopsis	Similar to At1g55200: protein kinase family protein (HF=2e-36)
Module size	6 genes
NF	0.10
%ile	17.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.94	1617353_at	CB972878	hypothetical protein LOC100244602	-	2e-36	At1g55200	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1607091_at	CB970875	hypothetical protein LOC100262262	-	1e-15	At2g36910	ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1606444_at	CB972596	hypothetical protein LOC100244602	-	9e-2	At1g29580	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.95	1612633_at	CF514304	hypothetical protein LOC100248215	-	3e-10	At3g56590	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.95	1620161_at	CF513760	hypothetical protein LOC100258606	-	8e-1	At3g02640	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.94	1611856_at	CF214981	hypothetical protein LOC100240940	-	4e-86	At3g16630	KINESIN-13A	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.6	92.5	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM287879	Green hard berry C19 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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