Co-expression analysis

Gene ID 1617338_at
Gene name hypothetical protein LOC100262579
Homology with ArabidopsisSimilar to At1g47240: NRAMP2 (HF=2e-22)
Module size 11 genes
NF 0.34
%ile 49.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.50.971617338_atBQ793025hypothetical protein LOC100262579-2e-22At1g47240NRAMP2O.I.H.G.S.X.
0.4464.10.981608525_atCF415433hypothetical protein LOC100248018-3e-12At4g15900PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)O.I.H.G.S.X.
0.4361.50.991608647_atCB007795hypothetical protein LOC100267012-4e+0At1g70660MMZ2 (MMS ZWEI HOMOLOGE 2)O.I.H.G.S.X.
0.3954.90.981608677_atCB977949hypothetical protein LOC100258930-3e-22At3g19130ATRBP47B (RNA-binding protein 47B)O.I.H.G.S.X.
0.3548.50.981617624_atCB970729hypothetical protein LOC100260069-4e-11At1g17370UBP1B (oligouridylate binding protein 1B)O.I.H.G.S.X.
0.3243.10.991619109_s_atCF203829.1hypothetical protein LOC100259405-1e+1At5g25020unknown proteinO.I.H.G.S.X.
0.2937.70.981618738_atCF372596hypothetical protein LOC100252524-3e-45At1g30230elongation factor 1-beta / EF-1-betaO.I.H.G.S.X.
0.2632.00.981620423_atBQ794906hypothetical protein LOC100251169-3e-1At3g53710AGD6O.I.H.G.S.X.
0.2124.00.981614300_atBQ798096hypothetical protein LOC100255047-3e-14At3g60830ATARP7 (ACTIN-RELATED PROTEIN 7)O.I.H.G.S.X.
0.2124.00.981611859_atCF210940hypothetical protein LOC100263524-2e-13At1g12820AFB3 (AUXIN SIGNALING F-BOX 3)O.I.H.G.S.X.
0.1718.20.981609770_atCF510595hypothetical protein LOC100244598-2e-1At4g34590GBF6 (G-BOX BINDING FACTOR 6)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.595.7GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO
3.495.5GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO
3.495.5GSM436350Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.294.9GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.094.2GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.893.4GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
2.793.0GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.692.5GSM147675Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation4Link to GEO
2.692.5GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO
2.591.9GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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