Co-expression analysis

Gene ID	1617329_at
Gene name	hypothetical protein LOC100255368
Homology with Arabidopsis	Similar to At3g19760: eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative (HF=5e-49)
Module size	6 genes
NF	0.56
%ile	82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.99	1617329_at	BQ798056	hypothetical protein LOC100255368	-	5e-49	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1612563_s_at	CF202478.1	hypothetical protein LOC100242819	-	3e-3	At3g50550	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1616601_at	CF210956	hypothetical protein LOC100256416	-	9e-9	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1607665_a_at	CB978733	hypothetical protein LOC100265617	-	1e-47	At3g55005	TON1B (tonneau 1b)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1606671_at	CA809598	hypothetical protein LOC100262399	-	3e-21	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.6	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.6	98.4	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
5.2	98.2	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.2	94.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.0	94.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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