Co-expression analysis

Gene ID	1617306_at
Gene name	similar to VPS24.1
Homology with Arabidopsis	Similar to At5g22950: VPS24.1 (HF=2e-79)
Module size	9 genes
NF	0.46
%ile	69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	88.6	0.97	1617306_at	CA808681	similar to VPS24.1	-	2e-79	At5g22950	VPS24.1	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.97	1621098_at	CB975046	hypothetical protein LOC100245221	-	8e-13	At1g16900	sugar binding / transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1611865_at	CB970887	-	-	1e+0	At5g47100	CBL9	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1619758_s_at	CB003371	hypothetical protein LOC100254356	-	1e+0	At3g01600	anac044 (Arabidopsis NAC domain containing protein 44)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1610856_at	CA809292	hypothetical protein LOC100247389	-	9e-27	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.97	1609968_at	CB972998	-	-	9e-5	At5g67630	DNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1609066_at	CD802207	hypothetical protein LOC100241642	-	1e-7	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1613564_at	CB981989	hypothetical protein LOC100263482	-	5e-1	At5g37720	RNA and export factor-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.98	1606915_at	CD799700	hypothetical protein LOC100267395	-	9e-8	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	98.2	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM436400	V. riparia (VR, PI588259) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436416	V. riparia (VR, PI588259) SD, 13h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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