Co-expression analysis

Gene ID 1617285_at
Gene name
Homology with ArabidopsisSimilar to At5g48175: unknown protein (HF=5e+0)
Module size 6 genes
NF 0.01
%ile 0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.811617285_atCD008619--5e+0At5g48175unknown proteinO.I.H.G.S.X.
0.012.10.911612073_atCF518687--3e-1At2g46280TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.012.10.911617904_atCD010829--5e-3At5g05390LAC12 (laccase 12)O.I.H.G.S.X.
0.012.10.901608999_atCD005003--2e-2At4g37090unknown proteinO.I.H.G.S.X.
0.012.10.911619674_atCD715040--3e-1At5g40500unknown proteinO.I.H.G.S.X.
-0.50.911608925_atCD721078--5e+0At5g05987PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.199.4GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM287883Green soft berry A23 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM436421V. riparia (VR, PI588259) SD, 13h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436418V. riparia (VR, PI588259) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436365Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM436366Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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