Co-expression analysis

Gene ID	1617280_s_at
Gene name	hypothetical protein LOC100258720
Homology with Arabidopsis	Similar to At2g27385: unknown protein (HF=5e-3)
Module size	6 genes
NF	0.89
%ile	99.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.98	1617280_s_at	CF373668	hypothetical protein LOC100258720	-	5e-3	At2g27385	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1615898_at	CF404727	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1613074_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.98	1609418_s_at	CF568955	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1607851_at	CF415102	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1611748_s_at	CB969590	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.4	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.7	96.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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