Co-expression analysis

Gene ID	1617276_at
Gene name	hypothetical protein LOC100243332
Homology with Arabidopsis	Similar to At2g37570: SLT1 (sodium- and lithium-tolerant 1) (HF=2e-7)
Module size	7 genes
NF	0.26
%ile	36.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.96	1617276_at	CF207725	hypothetical protein LOC100243332	-	2e-7	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1614995_at	BQ796323	hypothetical protein LOC100267574	-	4e-10	At4g04720	CPK21	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.98	1615494_at	BQ800152	hypothetical protein LOC100251050	-	1e+0	At2g19720	rps15ab (ribosomal protein S15A B)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1606716_at	CF607569	hypothetical protein LOC100249200	-	4e-10	At1g54220	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1609463_at	BQ800090	hypothetical protein LOC100267895	-	3e-1	At2g34720	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1620932_at	CA817618	hypothetical protein LOC100259549	-	8e-28	At5g26980	SYP41 (SYNTAXIN OF PLANTS 41)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1609475_at	CF210441	hypothetical protein LOC100257746	-	7e-24	At1g72810	threonine synthase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.9	93.8	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.7	93.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.4	91.3	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.3	90.7	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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