Co-expression analysis

Gene ID	1617225_at
Gene name	hypothetical protein LOC100245147
Homology with Arabidopsis	Similar to At2g18870: VEL3 (VERNALIZATION5/VIN3-LIKE) (HF=3e-1)
Module size	6 genes
NF	0.18
%ile	26.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1617225_at	BQ798495	hypothetical protein LOC100245147	-	3e-1	At2g18870	VEL3 (VERNALIZATION5/VIN3-LIKE)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1622320_at	CF514116	-	-	2e+1	At5g05113	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1615347_at	CF518500	hypothetical protein LOC100243052	-	2e-20	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.98	1606481_at	CF403961	hypothetical protein LOC100265434	-	2e-1	At5g30500	galactinol synthase, putative	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1620116_at	CF210995	hypothetical protein LOC100262620	-	3e-4	At5g47140	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	AFFX-r2-Ec-bioD-5_at		-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
2.0	88.2	GSM147674	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	3

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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