Co-expression analysis

Gene ID	1617206_s_at
Gene name	hypothetical protein LOC100244962
Homology with Arabidopsis	Similar to At5g67600: unknown protein (HF=8e-1)
Module size	6 genes
NF	0.90
%ile	99.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1617206_s_at	CB340600	hypothetical protein LOC100244962	-	8e-1	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.99	1611924_at	CA817406	hypothetical protein LOC100244683	-	2e-9	At1g55670	PSAG (PHOTOSYSTEM I SUBUNIT G)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.98	1608822_at	CF211356	hypothetical protein LOC100246732	-	8e-6	At3g46780	PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE 16)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1613642_at	CB002851	hypothetical protein LOC100244962	-	9e-18	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1613266_at	CA815997	hypothetical protein LOC100250168	-	2e+0	At3g16690	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1615822_at	CF208321	hypothetical protein LOC100260599	-	3e-92	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.9	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM436365	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.2	89.9	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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