Co-expression analysis

Gene ID 1617169_at
Gene name hypothetical protein LOC100263786
Homology with ArabidopsisSimilar to At1g16390: ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3) (HF=2e-8)
Module size 16 genes
NF 0.62
%ile 88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.941617169_atCF413676hypothetical protein LOC100263786-2e-8At1g16390ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)O.I.H.G.S.X.
0.8795.20.961607719_atBQ799914hypothetical protein LOC100253660-3e-10At3g61880CYP78A9 (CYTOCHROME P450 78A9)O.I.H.G.S.X.
0.8594.90.961615428_atAF373601.1MADS-box protein 2-2e-40At5g15800SEP1 (SEPALLATA1)O.I.H.G.S.X.
0.7491.00.961613748_atCD797578AP1-like protein-4e-17At2g03710SEP4 (SEPALLATA 4)O.I.H.G.S.X.
0.7189.50.951609505_atCB347496hypothetical protein LOC100259859-2e-1At3g19850phototropic-responsive NPH3 family proteinO.I.H.G.S.X.
0.7189.50.961611085_atBQ794277hypothetical protein LOC100241544-9e-2At1g60060unknown proteinO.I.H.G.S.X.
0.6988.30.971621723_atCA817798hypothetical protein LOC100248744-6e-14At1g61110anac025 (Arabidopsis NAC domain containing protein 25)O.I.H.G.S.X.
0.6787.90.951615645_atCB969433hypothetical protein LOC100257930-1e+0At2g42350zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6787.90.961607973_atCB969561--7e-4At4g18960AG (AGAMOUS)O.I.H.G.S.X.
0.6484.70.981617026_atCD797284--2e-1At2g43940thiol methyltransferase, putativeO.I.H.G.S.X.
0.5475.70.971619742_atAF265562.1MAD-box transcripion factor-2e-16At3g58780SHP1 (SHATTERPROOF 1)O.I.H.G.S.X.
0.5072.70.971622225_atBQ793105hypothetical protein LOC100249321-3e+0At3g07425unknown proteinO.I.H.G.S.X.
0.4969.30.971619180_atCB976469hypothetical protein LOC100252897-2e-14At1g17810BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)O.I.H.G.S.X.
0.4767.70.961610616_atCB921212hypothetical protein LOC100260773 /// hypothetical protein LOC100252365-5e-3At1g62710BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.3954.90.951619481_atCB348820hypothetical protein LOC100256947-2e-2At4g25140OLEO1 (OLEOSIN 1)O.I.H.G.S.X.
0.3650.70.951613204_atAF501625.1glutathione-S-transferase /// hypothetical protein LOC100249549 /// hypothetical LOC100267917-4e-8At1g17180ATGSTU25 (GLUTATHIONE S-TRANSFERASE TAU 25)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.194.6GSM436388V. riparia (VR, PI588259) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436373Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM436383Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436356Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436386Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436376Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
1.784.7GSM147712Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation41Link to GEO
1.784.7GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
1.784.7GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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