Co-expression analysis

Gene ID	1617120_s_at
Gene name	hypothetical protein LOC100265095
Homology with Arabidopsis	Similar to At4g18593: dual specificity protein phosphatase-related (HF=1e+0)
Module size	6 genes
NF	0.60
%ile	87.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.94	1617120_s_at	CF208320	hypothetical protein LOC100265095	-	1e+0	At4g18593	dual specificity protein phosphatase-related	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.95	1621931_at	CF210459	hypothetical protein LOC100265095	-	1e-1	At3g50920	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.94	1615933_at	CF510942	hypothetical protein LOC100241901	-	1e+0	At5g17690	TFL2 (TERMINAL FLOWER 2)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.94	1607566_s_at	CF200894.1	hypothetical protein LOC100267479	-	3e-20	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.95	1621899_at	BQ796169	hypothetical protein LOC100245154	-	3e-23	At3g04870	ZDS (ZETA-CAROTENE DESATURASE)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.95	1610743_s_at	BQ796944	9,10[9',10']carotenoid cleavage dioxygenase	-	2e-147	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	99.1	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.4	98.3	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
5.3	98.2	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.4	97.3	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.8	96.4	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.4	95.5	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
3.3	95.2	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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