Co-expression analysis

Gene ID	1617079_at
Gene name
Homology with Arabidopsis	Similar to At3g26900: shikimate kinase family protein (HF=4e-1)
Module size	12 genes
NF	0.60
%ile	87.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.97	1617079_at	CB972040	-	-	4e-1	At3g26900	shikimate kinase family protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1620204_at	BQ792129	-	-	8e-1	At1g20070	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1612893_at	CF513602	hypothetical protein LOC100243553	-	2e-18	At4g02510	TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159)	O.I.	H.G.	S.X.	Please select
0.72	89.7	0.98	1615236_at	BQ796877	-	-	1e+0	At5g48595	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.98	1612460_s_at	CF207746	hypothetical protein LOC100245544	-	4e-20	At2g38270	CXIP2 (CAX-INTERACTING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.98	1607640_at	CF215061	hypothetical protein LOC100249595	-	1e-19	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.97	1610047_s_at	CF204118.1	-	-	1e-19	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1621737_s_at	CB973303	hypothetical protein LOC100262728	-	3e-12	At3g47560	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1607285_s_at	CD013720	hypothetical protein LOC100262997	-	3e-54	At5g52520	OVA6 (OVULE ABORTION 6)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1610508_at	BQ794347	hypothetical protein LOC100253402	-	1e-9	At3g44620	protein tyrosine phosphatase	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1620133_at	CA816897	hypothetical protein LOC100256241	-	3e-2	At4g13220	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.97	1613278_at	CF212139	hypothetical protein LOC100255222	-	4e+0	At2g20760	protein binding / structural molecule	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM299458	D_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.0	88.2	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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