Co-expression analysis

Gene ID	1617074_s_at
Gene name	similar to Os04g0237300 /// similar to RNA polymerase alpha subunit /// similar to RNA polymerase alpha subunit
Homology with Arabidopsis	Similar to Atcg00750: - (HF=3e-128)
Module size	6 genes
NF	0.67
%ile	92.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	64.1	0.96	1617074_s_at	CF204027.1	similar to Os04g0237300 /// similar to RNA polymerase alpha subunit /// similar to RNA polymerase alpha subunit	-	3e-128	Atcg00750	-	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.97	1614676_s_at	BQ793152	ATP synthase subunit a, chloroplastic	-	0	Atcg00120	-	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.97	1614408_at	CB978599	-	-	5e-25	Atcg01130	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1614922_at	CA816734	-	-	2e-12	Atcg00050	-	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.97	1618524_x_at	CF202257.1	-	-	7e+0	At3g57840	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1611270_s_at	CF213958	-	-	1e-52	Atcg00070	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	95.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.9	93.8	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.5	91.9	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.4	91.3	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.3	90.7	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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