Co-expression analysis

Gene ID	1617036_at
Gene name	hypothetical protein LOC100243315
Homology with Arabidopsis	Similar to At3g21070: NADK1 (NAD KINASE 1) (HF=2e-5)
Module size	22 genes
NF	0.24
%ile	33.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.94	1617036_at	CF210807	hypothetical protein LOC100243315	-	2e-5	At3g21070	NADK1 (NAD KINASE 1)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1617021_at	CF405109	hypothetical LOC100255231	-	6e-2	At4g12060	Clp amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1616210_at	CB972026	hypothetical protein LOC100242447	-	1e+0	At1g70410	carbonic anhydrase, putative / carbonate dehydratase, putative	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1607088_at	CF607065	hypothetical protein LOC100254860	-	5e-22	At5g15640	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1606716_at	CF607569	hypothetical protein LOC100249200	-	4e-10	At1g54220	dihydrolipoamide S-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1609392_s_at	CF210020	hypothetical protein LOC100242395	-	2e-47	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.95	1621291_s_at	CB923282	hypothetical protein LOC100267365	-	1e-16	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1620591_at	CF207697	hypothetical protein LOC100253168	-	1e-10	At5g51050	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1611259_at	CD010419	hypothetical protein LOC100247271	-	2e-2	At2g26970	exonuclease family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1611843_at	CB343405	hypothetical protein LOC100264807	-	2e-8	At5g48870	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.97	1620445_at	CF414876	hypothetical protein LOC100244526	-	2e-12	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1608557_at	CA808980	hypothetical protein LOC100261282	-	9e-20	At3g52730	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1611249_s_at	CF517155	hypothetical protein LOC100255334	-	6e-29	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1614536_at	CF214118	hypothetical protein LOC100256194	-	1e-8	At1g04340	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1620055_at	CF369080	hypothetical protein LOC100243774	-	2e+0	At1g79310	AtMC7 (metacaspase 7)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1619182_at	CF208986	hypothetical protein LOC100250963	-	2e-1	At3g05760	nucleic acid binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1609192_at	CB975929	hypothetical protein LOC100265964	-	5e-6	At4g16566	histidine triad family protein / HIT family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1607085_at	CF515982	hypothetical protein LOC100263760	-	2e-10	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.97	1606896_at	CA815281	hypothetical protein LOC100251845	-	1e-6	At4g21105	cytochrome-c oxidase/ electron carrier	O.I.	H.G.	S.X.	Please select
0.13	13.3	0.97	1608047_at	CF405221	hypothetical protein LOC100267805	-	1e-5	At3g10260	reticulon family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1618931_at	CB973378	hypothetical protein LOC100265402	-	2e-31	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.96	1619061_at	CD717524	hypothetical protein LOC100245943	-	5e-57	At3g26020	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.0	88.2	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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