Co-expression analysis

Gene ID	1616983_at
Gene name	hypothetical protein LOC100254117
Homology with Arabidopsis	Similar to At5g45130: RHA1 (RAB HOMOLOG 1) (HF=1e+0)
Module size	10 genes
NF	0.11
%ile	19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.97	1616983_at	CF207498	hypothetical protein LOC100254117	-	1e+0	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1612937_at	BQ796823	hypothetical protein LOC100243615	-	8e-11	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1618667_s_at	CB339921	similar to predicted protein	-	4e-20	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.98	1615702_at	BQ797006	hypothetical protein LOC100268087	-	4e-5	At1g17980	nucleotidyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1615929_at	CB970992	hypothetical protein LOC100246610	-	7e-16	At5g49580	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1617244_s_at	CB341989	hypothetical protein LOC100262315	-	1e-23	At4g22150	PUX3	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.98	1614612_at	CF513589	similar to GAUT8/QUA1 (GALACTURONOSYLTRANSFERASE 8, QUASIMODO1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups /// hypothetical protein LOC100258818	-	4e-145	At3g25140	QUA1 (QUASIMODO 1)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.97	1621035_at	CB006610	hypothetical protein LOC100249467	-	4e-18	At1g04210	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.98	1612173_at	CF212353	hypothetical protein LOC100255312	-	3e-21	At5g56360	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	0.98	1619972_at	CF511808	hypothetical protein LOC100263609	-	2e-1	At5g56770	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM147703	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	32
2.7	93.0	GSM147709	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	38
2.5	91.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.5	91.9	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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