Co-expression analysis

Gene ID 1616983_at
Gene name hypothetical protein LOC100254117
Homology with ArabidopsisSimilar to At5g45130: RHA1 (RAB HOMOLOG 1) (HF=1e+0)
Module size 10 genes
NF 0.11
%ile 19.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.971616983_atCF207498hypothetical protein LOC100254117-1e+0At5g45130RHA1 (RAB HOMOLOG 1)O.I.H.G.S.X.
0.3345.70.981612937_atBQ796823hypothetical protein LOC100243615-8e-11At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.2937.70.981618667_s_atCB339921similar to predicted protein-4e-20At5g46020unknown proteinO.I.H.G.S.X.
0.2734.00.981615702_atBQ797006hypothetical protein LOC100268087-4e-5At1g17980nucleotidyltransferase family proteinO.I.H.G.S.X.
0.2225.60.981615929_atCB970992hypothetical protein LOC100246610-7e-16At5g49580DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.1515.60.981617244_s_atCB341989hypothetical protein LOC100262315-1e-23At4g22150PUX3O.I.H.G.S.X.
0.1010.30.981614612_atCF513589similar to GAUT8/QUA1 (GALACTURONOSYLTRANSFERASE 8, QUASIMODO1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups /// hypothetical protein LOC100258818-4e-145At3g25140QUA1 (QUASIMODO 1)O.I.H.G.S.X.
0.077.80.971621035_atCB006610hypothetical protein LOC100249467-4e-18At1g04210leucine-rich repeat family protein / protein kinase family proteinO.I.H.G.S.X.
0.056.00.981612173_atCF212353hypothetical protein LOC100255312-3e-21At5g56360calmodulin-binding proteinO.I.H.G.S.X.
0.056.00.981619972_atCF511808hypothetical protein LOC100263609-2e-1At5g56770unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.793.0GSM147703Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation32Link to GEO
2.793.0GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
2.591.9GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.591.9GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM436388V. riparia (VR, PI588259) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436394V. riparia (VR, PI588259) LD, 15h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.289.9GSM436387Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.189.1GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.189.1GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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