Co-expression analysis

Gene ID	1616981_at
Gene name	phospholipase D alpha
Homology with Arabidopsis	Similar to At3g15730: PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) (HF=4e-52)
Module size	13 genes
NF	0.60
%ile	87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	88.6	0.98	1616981_at	CB971105	phospholipase D alpha	-	4e-52	At3g15730	PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	AFFX-Vvi-actin-3_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.98	1612293_at	CB346119	hypothetical protein LOC100264912	-	1e-65	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.99	1609191_s_at	CB978023	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.99	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.99	AFFX-Vvi-actin-3_c6_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1607887_at	CF215963	hypothetical protein LOC100241008	-	2e+0	At5g50880	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	AFFX-Vvi-actin-3_c2_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	AFFX-Vvi-actin-3_c7_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.99	1618130_at	CF511795	hypothetical protein LOC100261654	-	1e+0	At5g23040	CDF1 (CELL GROWTH DEFECT FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.99	1618690_at	CF207597	hypothetical protein LOC100259195	-	3e-16	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.99	1613546_at	CF213271	hypothetical protein LOC100252142	-	4e-1	At1g74450	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7
1.6	83.3	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
1.6	83.3	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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