Co-expression analysis

Gene ID	1616855_at
Gene name
Homology with Arabidopsis	Similar to At5g24010: protein kinase family protein (HF=9e-15)
Module size	19 genes
NF	0.17
%ile	25.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	88.0	0.91	1616855_at	CD003909	-	-	9e-15	At5g24010	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.95	1617721_at	CF568847	-	-	1e-76	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1617607_at	CB918932	-	-	3e-2	At4g17090	CT-BMY (CHLOROPLAST BETA-AMYLASE)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1613291_at	CF972323.1	-	-	4e-4	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.95	1622616_at	CB006094	-	-	4e-1	At5g42080	ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.93	1613263_at	CB918718	-	-	2e-12	At4g16580	catalytic	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1614482_at	CF206009.1	hypothetical protein LOC100241833	-	2e-21	At4g38130	HD1 (HISTONE DEACETYLASE 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.94	1618975_at	CD006441	-	-	4e-4	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.94	1607830_at	CF568994	-	-	2e-72	At3g22110	PAC1	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1618512_at	BQ795722	hypothetical protein LOC100252904	-	5e-7	At5g06330	hairpin-responsive protein, putative (HIN1)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1620813_at	BQ800573	hypothetical protein LOC100245718	-	2e-8	At4g32600	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1609966_a_at	BQ798735	hypothetical protein LOC100249980 /// hypothetical protein LOC100245503	-	3e-1	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1614588_s_at	CF406014	hypothetical protein LOC100253521	-	8e-2	At3g12100	cation efflux family protein / metal tolerance protein, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.95	1621365_at	CK136934.1	-	-	9e-69	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1609077_at	CF606671	hypothetical protein LOC100264912	-	3e-13	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1619876_at	AF176496.1	-	-	7e-13	At1g09640	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.95	1619308_at	BQ795842	hypothetical protein LOC100251904 /// hypothetical protein LOC100248513	-	4e-13	At4g13010	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.92	1608977_at	CB007952	-	-	1e-35	At5g48370	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.94	1619156_at	CF209795	hypothetical protein LOC100263316	-	2e+0	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.0	88.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
1.9	87.2	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
1.8	86.0	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
1.8	86.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.6	83.3	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
1.5	81.7	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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