CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616847_s_at

Gene name hypothetical protein LOC100267942
Homology with Arabidopsis Similar to At5g38410: ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) (HF=2e-12)

Module size 6 genes

NF 0.68

%ile 93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 0.98 1616847_s_at CA816751 hypothetical protein LOC100267942 - 2e-12 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.91 98.8 0.98 1611247_s_at CF206748.1 similar to cytochrome f - 2e+0 At1g65490 unknown protein O.I. H.G. S.X.
0.67 87.9 0.98 1614231_s_at CB970079 hypothetical protein LOC100245250 - 3e-5 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) O.I. H.G. S.X.
0.57 79.8 0.98 1613691_s_at CF511746 hypothetical protein LOC100254533 - 5e-35 At2g05100 LHCB2.1 O.I. H.G. S.X.
0.50 72.7 0.98 1610039_s_at CA817529 similar to NADH-plastoquinone oxidoreductase subunit K - 0 Atcg00480 - O.I. H.G. S.X.
0.38 53.6 0.98 1622302_s_at CF207602 hypothetical protein LOC100245459 - 2e-19 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	94.6	0.98	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.
0.91	98.8	0.98	1611247_s_at	CF206748.1	similar to cytochrome f	-	2e+0	At1g65490	unknown protein	O.I.	H.G.	S.X.
0.67	87.9	0.98	1614231_s_at	CB970079	hypothetical protein LOC100245250	-	3e-5	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	O.I.	H.G.	S.X.
0.57	79.8	0.98	1613691_s_at	CF511746	hypothetical protein LOC100254533	-	5e-35	At2g05100	LHCB2.1	O.I.	H.G.	S.X.
0.50	72.7	0.98	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	O.I.	H.G.	S.X.
0.38	53.6	0.98	1622302_s_at	CF207602	hypothetical protein LOC100245459	-	2e-19	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.73	90.8	0.97	1613936_x_at	CF568996	-	-	8e-24	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.
0.67	87.9	0.97	1618031_s_at	CF404451	hypothetical protein LOC100243967	-	2e-12	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.
0.57	79.8	0.97	1607964_s_at	BM437259	hypothetical protein LOC100257686	-	4e-1	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	O.I.	H.G.	S.X.
0.50	72.7	0.94	1617935_at	CB974545	-	-	1e-123	Atcg01110	-	O.I.	H.G.	S.X.
0.50	72.7	0.97	1613588_at	CA818655	-	-	6e-175	Atcg00730	-	O.I.	H.G.	S.X.
0.50	72.7	0.98	1613581_at	CB981734	hypothetical protein LOC100262899	-	1e-17	At3g17800	-	O.I.	H.G.	S.X.
0.47	67.7	0.97	1616688_s_at	CB342776	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.
0.44	64.1	0.94	1613294_at	CD005027	-	-	1e+0	At2g29180	unknown protein	O.I.	H.G.	S.X.
0.44	64.1	0.96	1617180_s_at	CA814162	hypothetical protein LOC100247137	-	2e-33	At3g56240	CCH (COPPER CHAPERONE)	O.I.	H.G.	S.X.
0.44	64.1	0.97	1615820_at	BQ796436	hypothetical protein LOC100263593	-	1e-6	At3g07270	GTP cyclohydrolase I	O.I.	H.G.	S.X.
0.42	60.1	0.97	1615946_s_at	CB001399	hypothetical protein LOC100256891	-	5e-2	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.
0.40	57.7	0.96	1613394_at	CB342776	-	-	0	Atcg01050	-	O.I.	H.G.	S.X.
0.40	57.7	0.97	1607048_at	CB914076	hypothetical protein LOC100249101	-	7e-28	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	O.I.	H.G.	S.X.
0.40	57.7	0.97	1618020_x_at	CB972570	hypothetical protein LOC100267942	-	8e-4	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.
0.40	57.7	0.98	1608138_s_at	CB342671	-	-	0	Atcg00120	-	O.I.	H.G.	S.X.
0.39	54.9	0.97	1616440_at	CD798130	hypothetical protein LOC100240863	-	4e-3	At5g03900	-	O.I.	H.G.	S.X.
0.36	50.7	0.96	1621313_at	CD716028	hypothetical protein LOC100265298	-	5e-16	At3g27050	unknown protein	O.I.	H.G.	S.X.
0.35	48.5	0.98	1617645_s_at	CA818763	hypothetical protein LOC100257292	-	2e-96	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.
0.32	43.1	0.97	1609160_at	CF215744	hypothetical protein LOC100257877	-	2e-28	At5g47110	lil3 protein, putative	O.I.	H.G.	S.X.
0.31	41.3	0.94	1607354_at	CB968898	hypothetical protein LOC100250578	-	2e-2	At1g76990	ACR3	O.I.	H.G.	S.X.
0.31	41.3	0.96	1621086_at	CB971637	-	-	6e-2	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.31	41.3	0.97	1612273_at	BQ799966	-	-	3e-47	At2g34420	LHB1B2	O.I.	H.G.	S.X.
0.31	41.3	0.97	1614814_s_at	CB345895	hypothetical protein LOC100267103	-	5e-13	At2g47400	CP12-1	O.I.	H.G.	S.X.
0.29	37.7	0.93	1622705_at	CB972683	hypothetical protein LOC100250961	-	2e+0	At3g16180	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.28	37.7	0.96	1620226_at	CF372108	hypothetical protein LOC100254018	-	2e-24	At4g33460	ATNAP13	O.I.	H.G.	S.X.
0.27	34.0	0.94	1607956_at	CD719223	-	-	1e+0	At3g61920	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.95	1609549_at	CF210611	hypothetical protein LOC100259979	-	3e-18	At3g48560	CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1)	O.I.	H.G.	S.X.
0.27	34.0	0.97	1618414_at	BQ793409	hypothetical protein LOC100243384	-	9e-33	At4g30690	translation initiation factor 3 (IF-3) family protein	O.I.	H.G.	S.X.
0.25	30.5	0.92	1616374_at	CF206494.1	-	-	4e-7	At2g38170	CAX1 (cation exchanger 1)	O.I.	H.G.	S.X.
0.25	30.5	0.96	1607986_at	CF606959	hypothetical protein LOC100252345	-	2e-49	At1g19920	APS2	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 98.1 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
3.1 94.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.7 93.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.4 91.3 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.3 90.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.3 90.7 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.2 89.9 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.1	98.1	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.2	94.9	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
3.1	94.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.7	93.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.4	91.3	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.3	90.7	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.3	90.7	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.2	89.9	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

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Gene ID	1616847_s_at
Gene name	hypothetical protein LOC100267942
Homology with Arabidopsis	Similar to At5g38410: ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) (HF=2e-12)
Module size	6 genes
NF	0.68
%ile	93.0

Co-expression analysis

Gene ID 1616847_s_at Gene name hypothetical protein LOC100267942 Homology with ArabidopsisSimilar to At5g38410: ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) (HF=2e-12) Module size 6 genes NF 0.68 %ile 93.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1616847_s_at

Gene name hypothetical protein LOC100267942
Homology with Arabidopsis Similar to At5g38410: ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) (HF=2e-12)

Module size 6 genes

NF 0.68

%ile 93.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays