CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616847_s_at

Gene name hypothetical protein LOC100267942
Homology with Arabidopsis Similar to At5g38410: ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) (HF=2e-12)

Module size 6 genes

NF 0.68

%ile 93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 0.98 1616847_s_at CA816751 hypothetical protein LOC100267942 - 2e-12 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.91 98.8 0.98 1611247_s_at CF206748.1 similar to cytochrome f - 2e+0 At1g65490 unknown protein O.I. H.G. S.X.
0.67 87.9 0.98 1614231_s_at CB970079 hypothetical protein LOC100245250 - 3e-5 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) O.I. H.G. S.X.
0.57 79.8 0.98 1613691_s_at CF511746 hypothetical protein LOC100254533 - 5e-35 At2g05100 LHCB2.1 O.I. H.G. S.X.
0.50 72.7 0.98 1610039_s_at CA817529 similar to NADH-plastoquinone oxidoreductase subunit K - 0 Atcg00480 - O.I. H.G. S.X.
0.38 53.6 0.98 1622302_s_at CF207602 hypothetical protein LOC100245459 - 2e-19 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 98.1 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
3.1 94.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.7 93.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.4 91.3 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.3 90.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.3 90.7 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.2 89.9 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.27923.2.S1_x_at, orthologous to the query gene, 1616847_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 93.4 Ta.27923.2.S1_x_at At5g38410 small subunit - 3e-14 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) O.I. H.G. S.X.
0.83 93.4 Ta.30808.1.S1_s_at At5g38410 - - 4e-15 At3g26650 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT) O.I. H.G. S.X.
0.71 88.0 Ta.28363.2.S1_at At5g38410 - - 1e-4 At5g64040 PSAN O.I. H.G. S.X.
0.71 88.0 Ta.27761.1.S1_x_at At5g38410 - - 7e-6 At1g30380 PSAK (photosystem I subunit K) O.I. H.G. S.X.
0.71 88.0 Ta.85.1.S1_at At5g38410 23kDa oxygen evolving protein of photosystem II - 2e-10 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.67 86.3 Ta.28697.3.S1_at At5g38410 - - 8e-25 At3g61470 LHCA2 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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