Co-expression analysis

Gene ID 1616847_s_at
Gene name hypothetical protein LOC100267942
Homology with ArabidopsisSimilar to At5g38410: ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) (HF=2e-12)
Module size 6 genes
NF 0.68
%ile 93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.981616847_s_atCA816751hypothetical protein LOC100267942-2e-12At5g38410ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)O.I.H.G.S.X.
0.9198.80.981611247_s_atCF206748.1similar to cytochrome f-2e+0At1g65490unknown proteinO.I.H.G.S.X.
0.6787.90.981614231_s_atCB970079hypothetical protein LOC100245250-3e-5At3g15360TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)O.I.H.G.S.X.
0.5779.80.981613691_s_atCF511746hypothetical protein LOC100254533-5e-35At2g05100LHCB2.1O.I.H.G.S.X.
0.5072.70.981610039_s_atCA817529similar to NADH-plastoquinone oxidoreductase subunit K-0Atcg00480-O.I.H.G.S.X.
0.3853.60.981622302_s_atCF207602hypothetical protein LOC100245459-2e-19At5g66570PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.198.1GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
3.194.6GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.793.0GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
2.491.3GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147708Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation37Link to GEO
2.390.7GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
2.390.7GSM436410V. riparia (VR, PI588259) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
2.289.9GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os12g0274700, orthologous to the query gene, 1616847_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7391.1Os12g0274700At5g38410-Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment)9e-9At1g67090RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)O.I.H.G.S.X.
0.9097.1Os07g0544800At5g38410-Oxygen-evolving enhancer protein 3-2, chloroplastprecursor (OEE3) (16 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 16 kDa subunit)(Ferredoxin-NADP reductase binding protein) (BP)1e-4At4g21280oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)O.I.H.G.S.X.
0.9097.1Os07g0141400At5g38410-23 kDa polypeptide of photosystem II2e-13At1g06680PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)O.I.H.G.S.X.
0.8696.4Os06g0320500At5g38410-Chlorophyll a/b-binding protein4e-9At3g54890LHCA1O.I.H.G.S.X.
0.8596.1Os03g0778100At5g38410-Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F)6e-7At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.8295.0Os07g0148900At5g38410-Photosystem I reaction center subunit psaK,chloroplast precursor (Photosystem I subunit X) (PSI-K)(Light-harvesting complex I 7 kDa protein)4e-10At1g30380PSAK (photosystem I subunit K)O.I.H.G.S.X.
0.8194.8Os02g0197600At5g38410-Chlorophyll a/b-binding protein type III(Fragment)1e-14At1g61520LHCA3O.I.H.G.S.X.
0.8094.6Os04g0414700At5g38410-Conserved hypothetical protein3e-5At1g08380PSAO (photosystem I subunit O)O.I.H.G.S.X.
0.8094.6Os06g0316800At5g38410-Glycine-rich protein (Fragment)2e+0At5g40490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.7793.1Os08g0119800At5g38410--3e-2At2g33510protein bindingO.I.H.G.S.X.
0.7793.1Os01g0773700At5g38410-Photosystem II reaction center W protein (PSII 6.1kDa protein) (Fragment)9e-13At5g66005Expressed proteinO.I.H.G.S.X.
0.7692.2Os08g0435900At5g38410-Lhca4 protein,Type 4 protein of light-harvestingcomplex of photosystem I precursor (Fragment)1e-8At3g47470LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)O.I.H.G.S.X.
0.7692.2Os07g0435300At5g38410-Photosystem I reaction center subunit IV,chloroplast precursor (PSI- E) (Photosystem I 10.8 kDapolypeptide)4e-9At2g20260PSAE-2 (photosystem I subunit E-2)O.I.H.G.S.X.
0.7692.2Os08g0560900At5g38410-Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D)2e-6At4g02770PSAD-1 (photosystem I subunit D-1)O.I.H.G.S.X.
0.7391.1Os02g0581100At5g38410-Conserved hypothetical protein1e+0At3g06160transcriptional factor B3 family proteinO.I.H.G.S.X.

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