CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1616847_s_at

Gene name hypothetical protein LOC100267942
Homology with Arabidopsis Similar to At5g38410: ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) (HF=2e-12)

Module size 6 genes

NF 0.68

%ile 93.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 0.98 1616847_s_at CA816751 hypothetical protein LOC100267942 - 2e-12 At5g38410 ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B) O.I. H.G. S.X.
0.91 98.8 0.98 1611247_s_at CF206748.1 similar to cytochrome f - 2e+0 At1g65490 unknown protein O.I. H.G. S.X.
0.67 87.9 0.98 1614231_s_at CB970079 hypothetical protein LOC100245250 - 3e-5 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) O.I. H.G. S.X.
0.57 79.8 0.98 1613691_s_at CF511746 hypothetical protein LOC100254533 - 5e-35 At2g05100 LHCB2.1 O.I. H.G. S.X.
0.50 72.7 0.98 1610039_s_at CA817529 similar to NADH-plastoquinone oxidoreductase subunit K - 0 Atcg00480 - O.I. H.G. S.X.
0.38 53.6 0.98 1622302_s_at CF207602 hypothetical protein LOC100245459 - 2e-19 At5g66570 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 98.1 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.2 94.9 GSM147711 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 40
3.1 94.6 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.7 93.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
2.4 91.3 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.3 90.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.3 90.7 GSM436410 V. riparia (VR, PI588259) SD, 13h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147716 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 45
2.2 89.9 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the rice gene, Os12g0274700, orthologous to the query gene, 1616847_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 Os12g0274700 At5g38410 - Ribulose-1,5-bisphosphate carboxylase/oxygenasesmall subunit (Fragment) 9e-9 At1g67090 RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A) O.I. H.G. S.X.
0.90 97.1 Os07g0544800 At5g38410 - Oxygen-evolving enhancer protein 3-2, chloroplastprecursor (OEE3) (16 kDa subunit of oxygen evolvingsystem of photosystem II) (OEC 16 kDa subunit)(Ferredoxin-NADP reductase binding protein) (BP) 1e-4 At4g21280 oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ) O.I. H.G. S.X.
0.90 97.1 Os07g0141400 At5g38410 - 23 kDa polypeptide of photosystem II 2e-13 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.86 96.4 Os06g0320500 At5g38410 - Chlorophyll a/b-binding protein 4e-9 At3g54890 LHCA1 O.I. H.G. S.X.
0.85 96.1 Os03g0778100 At5g38410 - Photosystem I reaction center subunit III,chloroplast precursor (Light-harvesting complex I 17 kDaprotein) (PSI-F) 6e-7 At1g31330 PSAF (photosystem I subunit F) O.I. H.G. S.X.
0.82 95.0 Os07g0148900 At5g38410 - Photosystem I reaction center subunit psaK,chloroplast precursor (Photosystem I subunit X) (PSI-K)(Light-harvesting complex I 7 kDa protein) 4e-10 At1g30380 PSAK (photosystem I subunit K) O.I. H.G. S.X.
0.81 94.8 Os02g0197600 At5g38410 - Chlorophyll a/b-binding protein type III(Fragment) 1e-14 At1g61520 LHCA3 O.I. H.G. S.X.
0.80 94.6 Os04g0414700 At5g38410 - Conserved hypothetical protein 3e-5 At1g08380 PSAO (photosystem I subunit O) O.I. H.G. S.X.
0.80 94.6 Os06g0316800 At5g38410 - Glycine-rich protein (Fragment) 2e+0 At5g40490 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.77 93.1 Os08g0119800 At5g38410 - - 3e-2 At2g33510 protein binding O.I. H.G. S.X.
0.77 93.1 Os01g0773700 At5g38410 - Photosystem II reaction center W protein (PSII 6.1kDa protein) (Fragment) 9e-13 At5g66005 Expressed protein O.I. H.G. S.X.
0.76 92.2 Os08g0435900 At5g38410 - Lhca4 protein,Type 4 protein of light-harvestingcomplex of photosystem I precursor (Fragment) 1e-8 At3g47470 LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4) O.I. H.G. S.X.
0.76 92.2 Os07g0435300 At5g38410 - Photosystem I reaction center subunit IV,chloroplast precursor (PSI- E) (Photosystem I 10.8 kDapolypeptide) 4e-9 At2g20260 PSAE-2 (photosystem I subunit E-2) O.I. H.G. S.X.
0.76 92.2 Os08g0560900 At5g38410 - Photosystem I reaction center subunit II,chloroplast precursor (Photosystem I 20 kDa subunit)(PSI-D) 2e-6 At4g02770 PSAD-1 (photosystem I subunit D-1) O.I. H.G. S.X.
0.73 91.1 Os02g0581100 At5g38410 - Conserved hypothetical protein 1e+0 At3g06160 transcriptional factor B3 family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage