Co-expression analysis

Gene ID	1616840_at
Gene name	hypothetical protein LOC100255499
Homology with Arabidopsis	Similar to At1g09140: SF2/ASF-like splicing modulator (SRP30) (HF=9e-15)
Module size	12 genes
NF	0.43
%ile	64.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	89.7	0.98	1616840_at	CF608637	hypothetical protein LOC100255499	-	9e-15	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1610434_at	CF404432	hypothetical protein LOC100244562	-	1e+0	At5g24090	acidic endochitinase (CHIB1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1614602_at	CB004149	hypothetical protein LOC100244335	-	1e-32	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1618813_at	CB970187	hypothetical protein LOC100263840	-	2e+0	At1g69828	-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1609801_at	CF404736	hypothetical protein LOC100258598	-	6e-47	At3g21650	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.99	1610526_at	CF212320	hypothetical protein LOC100243575	-	2e-1	At2g44580	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1618348_at	CF373264	hypothetical protein LOC100265921	-	1e-47	At5g45750	AtRABA1c (Arabidopsis Rab GTPase homolog A1c)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1608147_s_at	CD802354	hypothetical protein LOC100265256	-	4e-72	At1g52740	HTA9 (HISTONE H2A PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1621155_at	BQ794745	hypothetical protein LOC100248478	-	8e-34	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1615071_at	CF512279	-	-	6e-13	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1607444_at	BQ798524	hypothetical protein LOC100247182	-	1e+0	At4g20095	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.99	1607119_at	CD799254	hypothetical protein LOC100247980	-	6e-71	At1g78920	AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.0	94.2	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.6	92.5	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.5	91.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.5	91.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.4	91.3	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.3	90.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM147681	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	10
2.1	89.1	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.0	88.2	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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