Co-expression analysis

Gene ID	1616838_at
Gene name
Homology with Arabidopsis	Similar to At1g12180: - (HF=3e-1)
Module size	31 genes
NF	0.27
%ile	37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	95.2	0.93	1616838_at	BQ797792	-	-	3e-1	At1g12180	-	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1621419_at	BQ796694	similar to Os09g0515500	-	4e+0	At3g53370	DNA-binding S1FA family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.96	1611430_at	CB975310	-	-	4e+0	At3g52790	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1620211_at	CF513911	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.97	1616843_at	CF606887	hypothetical protein LOC100252068	-	7e-17	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1619591_at	CB343124	hypothetical protein LOC100265473	-	5e-36	At5g16620	TIC40	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1611574_at	CF511277	hypothetical protein LOC100243229	-	1e-23	At4g30620	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1609245_at	CD714855	hypothetical protein LOC100249819	-	1e-6	At4g29430	rps15ae (ribosomal protein S15A E)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.96	1608179_at	CB005049	hypothetical protein LOC100260954	-	1e+0	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.98	1615943_at	CB971749	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1617318_at	CF209178	hypothetical protein LOC100258316	-	4e-12	At5g23300	PYRD (pyrimidine d)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.95	1621037_at	CB980438	-	-	5e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1609080_at	BQ797210	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1608879_s_at	CF204246.1	hypothetical protein LOC100265837	-	2e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1620282_at	CB977969	hypothetical protein LOC100243325	-	5e+0	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1620873_at	CB339891	hypothetical protein LOC100247687	-	1e-15	At2g37660	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.95	1610984_at	CF211158	hypothetical protein LOC100259256	-	1e+0	At1g14200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1608770_at	CF211789	-	-	6e-21	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1608170_at	CD798362	hypothetical protein LOC100248761	-	2e-24	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1606787_at	CF373239	hypothetical protein LOC100258674	-	4e-1	At1g13620	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.95	1622240_x_at	CF202008.1	-	-	7e+0	At5g37580	-	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.97	1619028_at	CF205704.1	hypothetical protein LOC100248919	-	3e-26	At3g60620	phosphatidate cytidylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.96	1608735_at	CF605804	-	-	3e+0	At5g41960	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1607721_at	CB005803	hypothetical protein LOC100254814	-	5e-32	At1g63000	NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.98	1622610_at	CF413855	hypothetical protein LOC100264665	-	5e-6	At5g15090	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.98	1607335_at	CD801694	hypothetical protein LOC100245908	-	1e-20	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1622059_at	CF208844	malate dehydrogenase	-	3e-40	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.95	1621926_at	CF373241	-	-	1e+0	At4g25310	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1618964_at	CB339459	hypothetical protein LOC100266690	-	1e-12	At3g03100	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1611098_at	CF519133	-	-	1e-3	At5g51180	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.97	1616726_at	BQ793969	hypothetical protein LOC100255605	-	8e-11	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
1.9	87.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.7	84.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.7	84.7	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
1.7	84.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
1.6	83.3	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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