Co-expression analysis

Gene ID	1616834_at
Gene name
Homology with Arabidopsis	Similar to At1g78590: NADK3 (NAD(H) KINASE 3) (HF=1e+0)
Module size	27 genes
NF	0.46
%ile	68.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.4	0.88	1616834_at	CF211484	-	-	1e+0	At1g78590	NADK3 (NAD(H) KINASE 3)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.92	1610042_at	CF403823	hypothetical protein LOC100261474	-	4e+0	At5g51400	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.92	1608820_at	CA810455	hypothetical protein LOC100261474	-	1e-62	At5g35970	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.93	1613486_at	CF215097	hypothetical protein LOC100253576	-	1e-20	At1g70000	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.91	1618989_at	BM437572	hypothetical protein LOC100258700	-	1e+0	At1g67785	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.92	1610036_at	CA815147	hypothetical protein LOC100244789	-	7e-2	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.94	1615821_at	CA818800	hypothetical protein LOC100252905	-	1e-31	At4g09350	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.93	1615141_at	CB344835	hypothetical protein LOC100247840	-	2e+0	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.94	1618742_at	CA817193	hypothetical protein LOC100244789	-	4e-1	At1g18630	GR-RBP6 (glycine-rich RNA-binding protein 6)	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.95	1618107_at	CF403374	hypothetical protein LOC100263831	-	1e-7	At4g25650	ACD1-LIKE (ACD1-LIKE)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.93	1608908_at	BM437446	hypothetical protein LOC100256431	-	3e-27	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.91	1618249_at	CF510539	hypothetical protein LOC100260378	-	2e-39	At2g24270	ALDH11A3	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.95	1606996_s_at	CA817527	hypothetical protein LOC100254512	-	1e-4	At2g05620	PGR5 (proton gradient regulation 5)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.94	1618432_at	CB345244	hypothetical protein LOC100267315	-	6e+0	At5g13825	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1622236_at	CB971900	hypothetical protein LOC100268024	-	2e-14	At3g01060	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.92	1617175_at	CB971040	hypothetical protein LOC100267980	-	1e+0	Atmg00910	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.93	1620634_at	CD720882	hypothetical protein LOC100247245	-	7e-18	At1g44446	CH1 (CHLORINA 1)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.91	1619486_at	CB001727	hypothetical protein LOC100241765	-	5e+0	At5g50790	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.93	1611167_at	CD007118	hypothetical protein LOC100250725	-	2e-50	At5g64840	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.93	1610735_at	CB341620	hypothetical protein LOC100258753	-	2e-3	At1g18660	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.94	1614720_at	CD719089	hypothetical protein LOC100263831	-	1e-44	At4g25650	ACD1-LIKE (ACD1-LIKE)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.94	1607155_at	CD718615	hypothetical protein LOC100266884	-	2e-6	At1g50020	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.95	1610871_s_at	CD716100	hypothetical protein LOC100244516	-	0	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1621055_a_at	CA813802	hypothetical LOC100263712	-	5e-1	At2g04039	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.93	1607658_at	CF512465	hypothetical protein LOC100259354	-	2e-31	At2g24820	TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.95	1614596_at	CD007432	hypothetical protein LOC100244123	-	6e-5	At3g18500	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.93	1606454_at	CB339489	hypothetical protein LOC100252385	-	2e-13	At5g17230	phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
4.1	96.9	GSM147716	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	45
2.9	93.8	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.9	93.8	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.4	91.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.3	90.7	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.2	89.9	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.2	89.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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