Co-expression analysis

Gene ID	1616806_at
Gene name	hypothetical protein LOC100259004
Homology with Arabidopsis	Similar to At2g01340: unknown protein (HF=6e-2)
Module size	6 genes
NF	0.43
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.97	1616806_at	CF605749	hypothetical protein LOC100259004	-	6e-2	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.96	1610567_at	CF212759	-	-	3e-5	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1608586_at	CF514688	hypothetical protein LOC100241814	-	4e-18	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.97	1613355_at	CB922574	hypothetical protein LOC100260952	-	6e-12	At5g07360	amidase family protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1613351_at	CB972999	hypothetical protein LOC100252023	-	2e-1	At5g12970	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1609302_at	CB979609	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.1	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.9	93.8	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.8	93.4	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM287894	Pink soft berry C26 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM287895	Pink soft berry B13 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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